Drosophila virilis: 6630776
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Entry
6630776 CDS
T01066
Symbol
tst
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dvi
Drosophila virilis
Pathway
dvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6630776 (tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvi03019
]
6630776 (tst)
Enzymes [BR:
dvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6630776 (tst)
Messenger RNA biogenesis [BR:
dvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
6630776 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
6630776 (tst)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
RhopH3_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
6630776
NCBI-ProteinID:
XP_002054810
UniProt:
B4M0F1
LinkDB
All DBs
Position
2:complement(4818821..4823158)
Genome browser
AA seq
1192 aa
AA seq
DB search
MDAIRGEDNLEKLRNYILYPDISIHDPLPDVLPRKFNEMRLLHIPKCPGSTRLVPRRDFV
TGEILEFVEVDVEDVGANANNSMSMQREPGLLEEMTRGSHMNYPFWPGGFDAKEPPPEIA
KLDVDNFELGDKLLTVPPGFVSGHDFSEAKKPEEPVATASNVDLLENLEHDLDVQQWLQM
TRSDSEANSTKAPQRDLQFPAEFKDVDDEIMNADLQPVLNISTTTKSFSSDWAEMVDISQ
PINNFKEQIPCPAMEFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIALSKR
DLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLYCGS
DITRDLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTK
KRKVYVISTLKRPVPLMHYLYTGAGGKSRDDIFLLVDAQGKFLQGNYEKAVERKKEMQSK
SKAGGPKNYVSSKQDQCTWIGLIDFLKRNNKMPVVAFTLSRNRCDANVASLQSVDLNTAV
EKGAVQKFFLQCLAKLKPPDRTIPQVLALKDALERGIGVHHSGILPILKEIVEMLFQNGL
VKLLFATETFAMGVNMPARTVIFDSHMKFDGMEMRNLKPGEYIQMAGRAGRRGHDENGTV
ILMCKASVPPSMELRPMILGLPEKLQSQFILRYAVILTCLRIESIKVEDIMQFSFKEFNQ
KLQLPTQQKLLQLAEDKFAMLPTLGEHLQPLIYFYDKSVEYWKEKHRIMKFIVTQPKIQK
ELKVGRVIVITQGKHYNKLAILLNVKSVLGKDTVYKVLVLDHQFKSNDSDNVNRGELYYK
ILSLTPQHKFFHPEGIGGHTVLDIRAIDILTITKSTIKVDADVIIRNWEQRQLERFKDAP
PGATVVKAVTELHQLNEAYNANPESIKYVNMSKEINVNADSEVAMLNYVDHLARQVGDVL
PHTNIAGFEQEFAKVYERRVLEIHIEELRFKNSAKNLTLYPDYCNKLQVLRALNYIDELN
EVTLKGKVACEMGQNELLITELILCNMFNDLEPAEIAALLSGLVFQAKIQGEPVIPEPLK
KCVAAFEQINDTILAEEQRCQAAIEAENNLNFGLLEVVYEWAKNKPFAEIMKLTEVQEGI
IVRCIQQLDETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggatgccattcgcggcgaggacaatcttgagaagctgcgcaattacatactttatcca
gatatatccattcatgatccgctgcccgatgtgctgccgcgcaagttcaatgaaatgcgc
ctgttgcacattcccaaatgcccgggaagcacaaggctggttccacgtcgagattttgtg
actggcgaaatactcgagtttgtcgaggtcgatgtggaggatgtgggcgccaatgccaat
aactcgatgtccatgcagcgtgagccaggtctgttggaggaaatgacgcgaggctcgcac
atgaactatcccttctggccgggcggctttgacgccaaggagccgccaccggagattgcc
aagctggacgtggacaactttgagttgggtgacaaactgctaacggtgccgccgggcttt
gtcagcggtcacgatttctcagaagccaaaaagcccgaggagccggttgccaccgccagc
aatgtggatctgctggagaatttggagcacgacctggacgtgcaacagtggctgcagatg
acgcgcagcgacagcgaagccaacagcacaaaggcaccacagcgagatctgcaatttccg
gcagagttcaaggatgtggatgacgagattatgaacgcagatctgcagccggtgctgaat
atatcgaccacaacgaaaagcttcagcagcgattgggcggaaatggtggacatcagccag
ccgattaacaatttcaaggagcaaataccctgcccggccatggagtttcccttcgaactc
gatgtattccaaaagcaggccattctcaagctggagcagcgccagtatgttttcgtcgcg
gcgcacacatccgcgggaaagaccgtcgtcgccgagtatgccatcgctctgtccaagcgg
gatctgacccgcaccatatacacgtcgcccattaaggcgctgtccaatcaaaaatatcgc
gactttcgcaaaaccttcaaggacgtgggcctaatcacgggcgatctgcaaatcgagcca
accgcctcgtgcctgatcatgaccaccgagatattacgctccatgctctactgcggcagc
gacataacccgtgacctggagtacgtcatatttgacgaggtgcactatattaacaatccc
gagcgcggccacgtctgggaggaggtcatcatattgctgccagatcatgtgaatattatc
atgcttagcgctacggtgcccaataccatggagctggccgattgggtgggtagcaccaag
aagcgaaaggtgtacgtgattagcacgctgaagcgtccagtcccattgatgcattacctc
tacactggcgccggtggcaagagccgtgatgacatctttttgttggtcgatgcccagggc
aaattcctgcagggcaactacgagaaggctgtggagcgcaagaaggagatgcagagcaaa
tctaaagcgggcggtcccaaaaactatgtcagcagcaagcaggatcagtgcacatggatt
ggtctgattgattttcttaagcgcaacaacaaaatgcccgtggtggccttcaccctgtcc
cgcaatcgttgcgatgctaatgtggcttcgctgcaatccgtggatctcaatacggcagtg
gagaagggagccgtgcaaaagttcttcctgcaatgcttggcgaagctgaagccacccgat
cgcactataccccaggtgctggcactgaaggacgcactggagcggggcattggtgtccat
cacagcggcatattgcccatacttaaggagattgtcgagatgctcttccagaacggtctg
gtcaagcttctctttgctaccgaaacctttgccatgggtgtcaacatgccggcccgtacg
gtcatcttcgactcgcacatgaagttcgatggcatggagatgcgcaatcttaagccgggc
gagtacatacagatggccggacgtgccggacgacgtggtcacgatgaaaacggcaccgtc
atcttgatgtgcaaggcaagtgtgccgccctccatggaactgcgtcccatgatcctcggc
ttgcccgagaagctgcagtcacaatttattcttcgttacgccgtcatcctgacgtgccta
cgcatcgaaagcatcaaggtggaggacattatgcagttcagctttaaggaattcaaccag
aaactgcagctacctacacagcagaagctgctgcaactggccgaggacaagttcgccatg
ctgcccaccttgggtgagcacttgcagccgctgatctatttctatgacaaatccgtggag
tactggaaggagaagcatcgcataatgaaatttattgtaacccagccgaaaatccaaaag
gaattgaaagtaggacgcgtcattgtcatcacccagggtaagcactataacaagctagcg
atattgctgaatgttaagtccgtcctgggtaaggacaccgtctacaaggtgctcgtgctg
gaccatcaattcaaaagcaatgacagcgacaacgtcaatcgtggcgagctctactacaaa
attctctcgctgacgccacagcacaagttcttccatccggagggcattggcggacacacc
gtgctggacattagagccatcgatatattaaccattacaaagtcaacaatcaaagtggat
gccgatgtcatcatacgcaactgggaacagcggcaattggagcggtttaaggatgcgcca
cctggtgccacagttgtcaaagccgtcacagagctgcatcagcttaacgaggcgtacaat
gccaatccggagagcatcaaatacgttaacatgtccaaggagattaatgtaaatgcagac
agcgaagtggccatgttgaactatgtggatcatctggcacgccaggtgggcgatgtgctg
ccacacaccaacattgccggctttgagcaggagttcgccaaggtgtacgagcggcgtgtg
ctggagattcacattgaagagctgcgcttcaagaactcggccaagaatttaaccctgtat
ccggattactgcaacaagctgcaggttttgcgcgcccttaattatattgatgagcttaac
gaggtgacgctcaagggcaaggtcgcctgcgagatgggccagaatgagctgttaattacc
gagctgatactctgcaatatgttcaacgatctggagccggcggaaatagctgcgctattg
tcgggtctggtgtttcaggccaaaatccaaggcgaacctgttattccagagccacttaag
aaatgcgtcgccgccttcgagcaaatcaatgacaccatcttggccgaggagcagcgctgt
caagcggcaatcgaggcagagaataatttaaactttggactgctcgaggttgtctatgag
tgggccaaaaacaagccttttgctgagattatgaagctgaccgaggtgcaggagggcatc
attgtgcgctgcatccagcaactggacgaaacgctgcgtgatgttaaaactgccgccatt
aggataggcaatcctggcctgcagtccaaaatggaagaggcctccgcggccataaagcgt
gatattgtattcacagccagtttatacacggaactctaa
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integrated database retrieval system
