Drosophila virilis: 6633444
Help
Entry
6633444 CDS
T01066
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dvi
Drosophila virilis
Pathway
dvi03013
Nucleocytoplasmic transport
dvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
6633444 (Upf1)
03015 mRNA surveillance pathway
6633444 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvi03019
]
6633444 (Upf1)
Enzymes [BR:
dvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
6633444 (Upf1)
5.6.2.5 RNA 5'-3' helicase
6633444 (Upf1)
Messenger RNA biogenesis [BR:
dvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
6633444 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
6633444 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
AAA_22
Helicase_RecD
DEAD
SLFN-g3_helicase
AAA_16
TFIIA
NPHP3_N
nSTAND3
SRP54
ATPase
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
6633444
NCBI-ProteinID:
XP_002056906
UniProt:
B4M8B6
LinkDB
All DBs
Position
X:6825829..6834100
Genome browser
AA seq
1219 aa
AA seq
DB search
MSVDTYAPSSALSFLDMDDNELLRGADTQPTQYDYRDFTMPSTSQSQTQGDQLDLQRRVS
VHNDIHPRLGSITNDLADLQFEEEDDEGGGGGIGGGGNMAYVKELPAHACKYCGIHDPAT
VVMCNNCKKWFCNGRGSTSGSHIINHLVRAKHREVTLHGDGPLGETILECYSCGVRNVFV
LGFIPAKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLPWLVKQPTEQGQLR
ARQISAAQINKLEELWKDNIEATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLE
ADYDKKLKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELYNP
WNEIGHVIKVPDNFGDDVGLELKCSTNAPVKCTSNFSVDFIWKCTSFDRMTRALRNFAMD
RNSVSNYIYSRLLGHGRADGSDEVLFRGPQPKLYSAPHLPDLNRSQVYAVKHALQRPLSL
IQGPPGTGKTVTSATIVYQLVKQHAGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSR
EAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETGELSSADEKRYRSLKRGTENQLLEA
ADVICCTCVGAGDVRLSRIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAED
RRLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQI
GIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGI
GFLNDPRRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESL
IHFQKPKKLVNNMNIGAHFMSTMMADAKEVMVPGSIYERSSGYGRQISASSQSQTINGGH
YASNAYGGGGGTVATGAGGNNMSNAAGYGAGNGNNNYGSMANPAGGGVGGAGAGGGGGGG
GVANPASWTASHLHDSIGYISNDHGAAALGNMPVPVGMFMNMSNLPPRFYNQHQQAIMAA
KQNRAMQQQQQQQQQQQQQQQQQQQQQQQNQAGYVPPIVGGKKSGKLSKARAGNVHAGAG
TATGTGATGASAAIGATPFSQQPTALSLQMTQPSGFALSQQPELSQDFGQISQMDGLLSQ
DVAFNVSGERSLNQFSQPY
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacacgtatgcgccgagctcggcgctctcgttcctggacatggatgacaat
gagctgctgcgcggcgccgatacgcagccaacgcaatatgattatcgtgactttaccatg
ccgtccacatcgcagagccagacccagggcgatcagctggatttgcagcgtcgtgttagc
gtacacaatgatatacatccacgtctgggctcgattaccaacgatttggccgatctgcaa
tttgaggaggaggacgatgagggcggcggcggcggcatcggtggcggcggcaatatggca
tatgttaaggagctgccggcacatgcctgcaaatattgtggcatacacgatccggccacg
gtggtcatgtgtaacaattgcaagaaatggttttgcaatggacgcggcagcacttccggt
tcgcacattatcaatcatctggtgcgtgccaaacatcgtgaggtcaccctgcacggcgac
gggccgctcggcgagaccatactcgagtgctattcgtgcggtgtgcgcaatgtgttcgtt
ttgggttttatacccgccaaagcggattcggtggtggtgttgctgtgtcgccagccgtgc
gccgcacagaattcgctgaaggacatgaactgggatcaggagcaatggaagccgcttatt
gccgatcgctgctttttgccctggctggtcaaacagcccacggagcagggacagctgcgt
gcacgccaaatttcggcggcacagatcaacaagctcgaggagctctggaaggacaatatt
gaggcgacatttcaggatttggaaaagcccggcatcgactcagagccggctcatgtgctg
ctgcgctacgaggatggatatcagtacgagaagactttcgggccgctggtgcgcctcgag
gcggactacgataagaaactgaaggaatccgccacacaggagaacatcgaagtgcgctgg
gatgtgggcctaaacaaaaagacaatcgcatactttacgctggccaaaaccgattcggac
atgaagcttatgcatggcgacgagctgcgtttacgctacgtgggcgagctctataatcca
tggaacgagattggccatgtgatcaaggtgccggacaactttggcgacgatgttggcctg
gagctgaagtgctccacgaatgctccggtcaagtgtacaagcaattttagcgtggacttc
atctggaagtgcacctcattcgatcgcatgacacgcgctctgcgcaactttgccatggat
cgcaattccgtatcgaattacatctattcgcgcctgctgggccacggacgtgccgatggc
agcgacgaagtgctctttcgcggaccacagcccaagctgtacagtgcaccgcacctgccg
gacctcaatcgctcgcaggtgtatgccgtaaagcatgcgctgcagcgtccgcttagcctg
atccagggaccgccgggcacgggcaagacggtcacctcggcgaccattgtctaccagctg
gtgaagcagcatgccggcactgtgctggtgtgcgcgcccagcaatacggctgtcgatcag
ctgacggagaaaattcatcgcaccaatctgaaggtggtgcgcgtctgtgccaagagccgt
gaggcgatcgatagtcccgtcagcttcctggcgctgcacaatcaaatacgcaatatggaa
accaattcggagctgaagaagctgcagcagctcaaggatgagaccggcgagcttagctcg
gcggatgagaaacgctatcgcagcctaaaacgcggcaccgaaaaccaattgctcgaggcg
gccgatgtcatctgttgcacctgtgtgggcgccggtgatgtgcgtctatctcgcatcaaa
ttcacatcgatactgattgatgagtccatgcagtcgacggagccggaatgcatggtgccc
gtggtgctcggcgccaagcaattgatcctggtcggcgatcattgccagctgggtccggtg
gttatgtgcaagaaggcggcacgcgccggcctctcgcagagcctgttcgagcgtctggtg
gtgctcggcatacgtccgttccgtctcgaggtgcagtatcgcatgcatccggagctatcg
caatttccatcaaatttcttctacgagggctcgctgcagaacggcgtctgcgccgaggat
cgacgcctcaaactggacttcccctggccgcagccagagcgtccgatgttctttttggta
acgcagggccaggaggagattgccggctcgggcacctcgttcctcaatcgcaccgaagcg
gccaatgtggagaagatcacgacacgcttcctaaaggcgggcatcaagcccgaacagatc
ggcatcataacgccctatgagggacagcgcgcctatctggtccagtatatgcagtatcag
ggcagtttgcattcgcgtctctatcaggagatcgagatagccagcgtggatgcgttccag
ggccgtgaaaaggacatcatcataatgtcctgtgtacgctcgaacgagcgccagggcatc
ggcttcctcaacgatccgcgtcgcctcaacgtggccctaacacgcgccaaatacggcatc
atcatcgtgggcaatcccaaggtgctggccaagcagcagctgtggaatcatttgctcaac
ttctacaaggatcgcaaggtgcttgtcgagggctcgctgaacaatctaaaggaatcgctc
atacacttccagaagcccaagaagctggtgaacaacatgaacatcggcgcccatttcatg
tccaccatgatggccgatgccaaggaggtgatggtgcccggctccatatacgagcgcagc
agcggctatggccgccaaatctccgccagctcgcaatcacaaacaatcaatggcggccac
tatgcatccaatgcttatggtggcggcggcggcaccgttgccaccggcgccggcggcaac
aacatgtccaatgcagccggctacggtgccggcaatggcaataacaattacggcagcatg
gccaatcctgccggcggcggtgtcggcggtgctggtgctggtggtggtggtggtggtggc
ggcgttgccaatcccgccagctggacggccagccatctgcacgattcgattgggtatata
tcgaatgatcatggcgccgccgccttgggcaacatgccggtgcccgtgggcatgttcatg
aacatgagcaatcttccgccgcgtttctacaatcagcatcagcaggcaatcatggccgcc
aagcagaatcgtgccatgcaacagcaacaacaacagcaacagcagcaacaacaacaacaa
caacagcagcagcagcagcagcaacagaatcaggcgggctatgtgccgcccattgtgggt
ggcaagaagagtggcaaattgtcgaaggcgcgcgctggcaatgtccatgctggagcgggc
acagcaactggcacaggagcaactggagcaagtgcagcaatcggagcgactccgttcagc
caacagccgacggctttgtcgctgcagatgacacagccgagcggatttgcgctctcacag
cagccggaattgtcgcaggactttggccagatctcgcaaatggatggactgctctcccag
gatgttgccttcaatgtgtcgggcgaacgcagtttgaaccaattttcgcaaccttactga
DBGET
integrated database retrieval system
