Drosophila virilis: 6633931
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Entry
6633931 CDS
T01066
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dvi
Drosophila virilis
Pathway
dvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6633931 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvi03019
]
6633931 (Mtr4)
03041 Spliceosome [BR:
dvi03041
]
6633931 (Mtr4)
03009 Ribosome biogenesis [BR:
dvi03009
]
6633931 (Mtr4)
03016 Transfer RNA biogenesis [BR:
dvi03016
]
6633931 (Mtr4)
Enzymes [BR:
dvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6633931 (Mtr4)
Messenger RNA biogenesis [BR:
dvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
6633931 (Mtr4)
Spliceosome [BR:
dvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
6633931 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
6633931 (Mtr4)
Ribosome biogenesis [BR:
dvi03009
]
Eukaryotic type
Pre-60S particles
Helicases
6633931 (Mtr4)
Transfer RNA biogenesis [BR:
dvi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
6633931 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
MAM1
nSTAND3
Motif
Other DBs
NCBI-GeneID:
6633931
NCBI-ProteinID:
XP_002057620
UniProt:
B4M917
LinkDB
All DBs
Position
4:complement(26114251..26117816)
Genome browser
AA seq
1069 aa
AA seq
DB search
MDIDELFDCFNEVPPESLQLPVPYPTRKANPIASETKSPESARKANKRDANTVDLTIEEP
TEDEGEEEHAKRQRVDGGKTDNSSDINQETSNVADDETEGLVKIEKDDEVKELDDCALEA
LRVRIVTHQLVSPESCTHEVAAHPDQEYIPLQPFTGVPAKEYPFVLDPFQKQAILCIDNS
QSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFQDVGLVTG
DVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLP
DNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDE
KGQFKEDNFTTAMAVLANAGEAAKGDQKGRKGGVKGHNSGQTNIFKIVKMIMERHFAPVI
IFSFSKKDCEVYAMQMAKLDFNTIDEKKLVDEVFNNAMDVLSEEDRRLPQVENVLPLLRR
GIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFR
WISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPVVGREIVQGKADTLNSAFHLTYNMV
LNLLRVEEINPEYMLERSFYQFQNQAALPGLHDQVQQKTQQLEKLTVKDEHNIASYHHIR
EQLELNGNKFREWLTKPQYLVPFLQPGRLVKVSAGKQEYDWGLVLNFKKQEQNRKNPLKS
ETGVVIDMLLHVSEEAAKTGDTEPCKPNERGCMEVVPVANTLITQISSIRVYFPNDLRTA
DNRRAVLKTIQEAKKRFPLGPPVLHPIDDMNIKDPEFRQIVDTIAQFESLLEEHPLHKSP
ELERVHKRYIEKLKLQSELNGLKAELKAARSLLQMDELKYRKRVLRRMGYCKPGDVIEFK
GRVACELSSADELLITEMIFNGVFNELSAPQAVALLSCFVCDEKSSESPKSATELSGPLR
SLQSLARRIAKVSTECKLSLDEENYVDKFKPFLMDVVLAWCKGSSFLSVCKMTDIFEGSI
IRCMRRLEELLRQLCQASKTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggacatagacgagctattcgattgcttcaacgaggtgccgcccgaaagtctgcaattg
ccggtaccctatcccacaaggaaggcaaacccaatcgcgtctgaaacaaaaagtccggaa
agcgcccggaaggccaacaaacgtgatgcaaatactgtagatcttaccatcgaggagccg
acggaggatgaaggggaggaagagcatgcaaagcgacaacgtgttgatgggggaaagacc
gataacagcagcgacataaaccaggagacatcaaatgttgctgacgatgaaacagaaggt
ttagttaaaattgaaaaagatgacgaagttaaggaactggacgattgtgctttggaggcg
ctgcgagtgcgcattgttacacaccagctggtgtcgccggagtcctgcacacacgaggtg
gccgcccatcccgaccaggagtacataccactgcagccatttacgggcgttcccgccaaa
gaatatccattcgtgctggatccattccagaaacaggccattttgtgcatagacaactca
cagagcgtgctagtatcggcgcacacctccgccggaaagactgtggtggcggaatacgcg
atagccaagtccctggcggccaagcaacgcgttatttatacgacgccgattaaggcgctg
tccaatcaaaagtttcgcgaattcacagatgaattccaggatgttggtctggttactggc
gatgttaccatcaatccatcggcctcctgcctgatcatgacaacggaaattctgcgtaac
atgctgtaccgcggcagcgagattatgcgcgaggtcggctgggtagtattcgatgagatt
cactacatgcgcgacaaggagcgcggcgtggtgtgggaagagacgctcatcctgttgccg
gacaatgtgcgctatgtcttcctctcggccaccatacccaatgctcgccagtttgccgaa
tgggtatgccatctgcacaagcagccctgtcatgttgtctacacggattacaggccaacg
ccgctgcagcattacatctttccggctggcggcgatggcattcacttgattgtcgacgag
aagggtcagttcaaggaggacaactttacgacggctatggcggtgctggctaatgcgggc
gaggcggcaaagggtgaccagaagggccgcaagggcggcgtaaagggtcacaattcgggc
cagacgaacatctttaagattgtgaagatgattatggagcgtcactttgcgcccgtcatc
atattttcgttcagtaaaaaggactgcgaagtctatgccatgcaaatggccaagctggac
tttaatacaatcgatgagaagaagctggtcgatgaggttttcaacaacgccatggacgtt
ctttcagaggaggatcgcagactgccacaggtggaaaatgtgctgccattgctgcgacgt
ggcattggcatacatcacggtggactgctgcccatacttaaggaaacgattgagattcta
tttggagagggtctgatcaaggcgctctttgccacggagacctttgccatgggcctgaac
atgcctgcgcgcacagtcttgtttacagcgccgcgcaaatttgatggcaaggactttcgg
tggatcagctcgggcgagtacatacaaatggctgggcgtgccgggcgtcgcggcttggac
gacaagggtattgttatactgatgattgatgagaaggtgtcacctgtggtgggccgagaa
atagtgcagggcaaagcagatacactaaactcggcgttccatttgacctacaacatggta
ctgaatctactgcgcgtagaggaaataaacccggagtacatgctggagcgcagtttctat
cagttccaaaatcaggccgcactgcccggtctacatgatcaagtgcagcagaagacacaa
cagctcgaaaagctgaccgtcaaggatgagcataacattgcgtcctatcatcacatccgc
gaacagctcgagttaaatgggaacaagttccgcgagtggctgaccaagccgcaatatctg
gtgccctttttacagccaggccggctggtcaaggtgtcagccggaaagcaggagtatgac
tggggtcttgtattgaacttcaagaagcaggaacagaatcgcaagaacccattgaaaagt
gaaacgggagttgttattgatatgctactgcatgtcagcgaggaggcagccaaaactggc
gacaccgagccctgtaagcccaatgaacgtggctgcatggaggtcgttccggttgccaat
acacttatcacacaaatcagttcaatacgcgtctattttcccaacgatctgcgcacggcg
gacaatcgccgtgccgtgctgaagaccattcaggaggctaagaaacgatttccacttggt
ccacccgtacttcatcccatcgatgatatgaatatcaaggatccggaatttcgccagatt
gtggataccattgcacagttcgaatcgttgctcgaggagcatccgctgcacaaatcgcca
gagctggagcgtgttcacaagcgctatatcgaaaagctaaagctacaatccgagctcaat
ggtctgaaggcggagctgaaagctgcgcgcagcctgctgcagatggacgagcttaagtat
cgcaagcgtgtactccggcggatgggctactgcaagccaggcgatgtcatcgagtttaag
ggccgcgtcgcctgtgagctaagctccgcggatgagttgctcatcaccgaaatgatattc
aacggcgtgttcaacgagctctcagccccgcaggcggtcgcattgctctcctgtttcgta
tgcgacgagaagtccagtgaatcgcccaagagcgctacagagctgtccggcccgttgcgc
tctttgcagagcctggcgcggcgcattgccaaggtatccaccgaatgcaaactaagtttg
gacgaggagaactatgtggacaagttcaagcccttcctaatggacgtcgtgctggcctgg
tgcaagggttccagctttctaagcgtctgcaaaatgaccgatatcttcgaaggctccatc
attcgctgcatgagacgcttggaggagctgctgcgtcagctgtgccaggcatccaaaacg
attggcaacacggatctggagaacaaattctccgaaggcattcgtctgctcaagcgcgac
attgtctttgccgcttcgctgtatctatag
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