Drosophila virilis: 6634217
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Entry
6634217 CDS
T01066
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dvi
Drosophila virilis
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvi03016
]
6634217 (RtcB)
Enzymes [BR:
dvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
6634217 (RtcB)
Transfer RNA biogenesis [BR:
dvi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
6634217 (RtcB)
Prokaryotic type
tRNA splicing ligases
6634217 (RtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
6634217
NCBI-ProteinID:
XP_002057666
UniProt:
B4M963
LinkDB
All DBs
Position
4:complement(25730065..25732075)
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AA seq
506 aa
AA seq
DB search
MVVRPYVEELKYLEKINDHCWRIKKGFQPNMNVEGVFYVNSRLEKLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMDDPLSVVSPGGVGFD
INCGVRLLRTNLYEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLSADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWSASKMGIEEKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVE
NHIVDGRERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTERGM
QETFGSTCHGAGRALSRAKSRRNLDYKEVLDKLEQIGIAIRVASPKLVMEEAPEAYKDVT
DVVDTCHAAGISKKCIKMRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtccgaccctacgtcgaggagctgaagtatctggagaagataaatgaccactgc
tggcgcatcaagaagggctttcagcccaacatgaacgttgaaggtgtcttctacgtgaac
agccgcctggagaagcttatgctggaggagctgaaaaactcatgccgccccggcgctgtc
ggcggctttctaccgggcgtcaagcagatcgcaaatgtggccgctttgccgggcattgtg
ggccgctcaattggactgccggacatccactcgggctatggctttgccattggcaacatg
gctgctttcgatatggatgacccgctgtcggtagtcagccctggcggcgttggtttcgac
atcaattgtggcgtgcgtctgctgcgcacgaatctgtacgagaaggatgtgcagccggtt
aaggagcagctggctcagtcgctattcgatcatataccagtgggcgtgggctctaaaggc
attataccaatgaatgcccgcgatctggaggaagcacttgagatgggcatggactggtct
ttgcgcgagggctacgtctgggcagaggacaaggagcattgcgaggagtatgggcgaatg
ctcagcgccgatccggccaaggtgagcatgcgcgccaagaagcgtggcctacctcagctg
ggcaccctgggcgctggcaatcactatgccgaaatacaagtggtcgacgaaatctatgac
aagtggagcgcctccaaaatgggcatagaggagaagggtcaggtggtcgtcatgatacac
tcgggcagtcgcggctttggtcatcaggtggccaccgacgccctggtgcaaatggagaag
gccatgaagcgcgacaagatcgaaaccaacgatcgccaattggcctgtgcgcgcatcaat
tccgtcgaaggccaggattacttaaaggccatggctgcggcggccaattttgcctgggtg
aatcgcagctcgatgaccttccttacgcgtcaggcatttgccaagatgttcaacacaacg
cccgatgatctggacatgcacgtcatctacgatgtttcgcacaacattgccaaggtggag
aatcacattgtcgacggccgggagcgaaagctgctggtgcatcgcaagggctccacgcgc
gccttcccgccacatcatccattgataccagtcgactatcagttgaccgggcaaccggtt
ctggtcggcggcacaatgggcacctgcagctacgtcttgaccggcaccgagcgcggcatg
caggaaacctttggcagcacctgccacggtgcgggtcgggctctatcacgcgccaagtcg
cgtcgcaacctggactacaaggaggtgctggacaaactggagcaaattggcattgccata
cgcgtagccagccccaaactagtcatggaggaagcacccgaagcgtacaaggatgtcacc
gacgtcgtggacacctgccacgcggccggcatcagcaagaagtgcatcaaaatgcgaccc
attgcagttatcaaaggctga
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