Nitratidesulfovibrio vulgaris DP4: Dvul_0079
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Entry
Dvul_0079 CDS
T00452
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dvl
Nitratidesulfovibrio vulgaris DP4
Pathway
dvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvul_0079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvl03019
]
Dvul_0079
03009 Ribosome biogenesis [BR:
dvl03009
]
Dvul_0079
Enzymes [BR:
dvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dvul_0079
Messenger RNA biogenesis [BR:
dvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dvul_0079
Ribosome biogenesis [BR:
dvl03009
]
Prokaryotic type
rRNA helicases
Dvul_0079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
ABM27103
UniProt:
A0A0H3A487
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All DBs
Position
complement(96130..97728)
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AA seq
532 aa
AA seq
DB search
MESVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFG
LPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA
LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV
QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD
AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA
TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGQAFSFAAGRDVYKLRDIQ
RVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLA
ATLLRMIMQRDRIDLPGARQTDDIGTGRVRLFFNVGRRMRITPRDLVGAIAGETGISGRS
IGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRGFRLAVEQASPREGQDRAA
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgtagaatcgttcaaggacctccccctcgaagaggaactgctcaaggccatc
gaagaactcggcttcaccgagccctcgcccatccagtccatcgccatcccccgcctgctt
gaaggccgcgacgtgataggtcaggcccagaccggcaccggcaagaccgccgccttcggt
ctgcccctgcttcagcgcatcgacgccgccgaccgctcggtacaggccctcgtgctctgt
cccacccgtgaactggccctgcaggtggccaatggcctcaccgccctcgccaagcatctg
cgcggggtacgcatcctctccgtgtacggcggccagcccatcgaaccgcaggcctccgcc
ctgcgccgtggcgcacaggtcgtcgtgggtacgcccggacgcatcctcgaccatatcaac
cgcggcaccctgcaactcggcgtcgtgcgcatgaccgtactcgacgaagccgacgaaatg
ctcgacatgggctttcgcgaggacatcgaacgcatcctcagcgaaatgcccgaatgggtg
cagtctgcgttcttctccgccaccatgcccgacggcatcctcgaactcgcccgccgcttc
ctgcgcgaacccgagttgctgcgcgtgacgcgccgccagcttaccgtcgccaatacggaa
caggcatggttcgaagtgcggcccttccgccgcgtggacgccgtatgccgaattttcgac
gcctacattccgcgcaaggccatcgtcttccgcgccaccaagcagggcgtcgatgaactg
gccgccgcactccagcagcgcggcatcctcgccgacgccctgcacggcgacctcaaccag
acccagcgcgaacgtgtcatgtcccgcttccgcgccgggggcatctccgtgctggtcgcc
accgacgtggcagcccgtggtctggacgttgacgacgtggacaccgtcatcaacttcgac
ctgcccaacgaccccgagacctacgtgcaccgcataggccgtactggccgtgctggacgc
accggtcaggccttctcgttcgccgcaggtcgcgatgtgtacaagttgcgcgacatccag
cgcgtgaccgggtcgcgcatcgaccgccgcgccatgcccaccgccgccgacgcctcccgc
gcccgcaccgggcagctgcttgaggaagtcgccgccgggcttgccagcgccgagacctcg
gcctgcctgcctgtggtggagaagctcatcgccgaaggcgccgacccgacccagcttgcc
gccacgctgctgcgcatgatcatgcagcgcgaccgcatcgacctgccgggtgcccgccag
accgatgacatcggcaccgggcgcgtgcgcctgttcttcaacgtgggccgccgtatgcgc
atcaccccgcgtgacctcgtgggcgccatcgccggtgagacgggcatctccggccgttcc
atcggttccatcgaaatccacgaccgcttctcgttcgtggaagtggatgcctccatcgcc
cccgaagtggtgtcggtgatgcacggcaaccagattcgcggcttccgcctcgccgtggaa
caggcaagcccccgtgagggtcaggaccgcgccgcgtaa
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