Nitratidesulfovibrio vulgaris DP4: Dvul_0179
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Entry
Dvul_0179 CDS
T00452
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dvl
Nitratidesulfovibrio vulgaris DP4
Brite
KEGG Orthology (KO) [BR:
dvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvl03016
]
Dvul_0179
Enzymes [BR:
dvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dvul_0179
Transfer RNA biogenesis [BR:
dvl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dvul_0179
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
Phage_zn_bind_8
Motif
Other DBs
NCBI-ProteinID:
ABM27203
UniProt:
A0A0H3A5B1
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All DBs
Position
complement(218125..220221)
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AA seq
698 aa
AA seq
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MATPSGIVRFPGAGCVVEFMQGNRPQIAWVMEEQGGRLRLFLPNRRETKLAAARLLPWAG
PRYDGERSRDDMVALLEEHRQRRDTREADIQPLELWEMVQGEVEQASVEWFAELLGETPG
VDEVAAMGRALLGCKTHFKFHPPDFEVYDAAKVEARMVEMEAARVREALVEAGQAFIKVL
WDVHCRRRTMPLPSSSEMPPAEVAERLATLLRTRMADPDDHDSDSVWKQVTKGLPDDAHM
PLHLAAAWGIVPVHHNFWMDRAGYAPGDEWAIDHVDEIDALMKRVEALREPLVDGTFISI
DSSTTRDIDDAFDISPSPEGGWILRLVLASPVTGWDFDGPLDRAVLRRATSIYLPERSHH
MMPETLGTDAYSLLAGQDRPALLVTFDIAADGSLRSTTPATGWVRLAANLTYTECEACLT
GEGDAGRAAPHADRLALADALARVRQQLRVAAGAVIIERDDPKVTLEGEGCAVKVHVAPP
DETPRAQLLVSEMMILANAAIASWGAERGITLLHRTQDVGIPREYAGVWNQPHDIARVVK
ALAPAHLEPVAKPHAGIAVPAYSPVTSPLRRYPDLVNEAQVIHYLTHGTPRWSREEVEAM
LPLLGARLDAAGQVQRFRPRYWKLFYIRQQGDKTWHEAVVTEENDAFVTISLPEVQIFVR
GRRSTFGDKVYPGQHFNVRLGKVHPLNNEIQIVDAMEG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaccttcgggcatcgtgcgttttcccggcgctggctgcgtcgtggagttcatg
cagggcaaccgcccccagatagcgtgggtcatggaggaacagggcggccgcctgcgcctg
ttcctgcccaaccggcgcgagacgaagctcgccgcggcgaggcttctgccatgggcaggg
ccgcgttacgatggcgaacgctcgcgtgacgacatggtggcgctgctcgaagagcaccgc
cagcggcgcgacacccgcgaagccgacatccagcccctcgaattgtgggagatggtacag
ggcgaagtggaacaggcgtccgtggaatggttcgccgaactcctgggcgagactccgggc
gtcgacgaggtggccgccatgggccgggcactgctcggttgcaagacgcacttcaagttc
cacccgccggacttcgaggtctacgacgccgccaaggtcgaagcgcgcatggtcgagatg
gaggccgcgcgagtgcgtgaagccctcgtcgaagccggacaggccttcatcaaggtgctg
tgggacgtgcattgccgccgccgcaccatgccgctgccctcgtcttccgagatgcccccc
gccgaagtggcggaacgtctcgccacgctgctgcgcacccgcatggccgacccagacgac
catgacagcgattcggtctggaagcaggtcaccaagggcctgcccgacgacgcgcacatg
ccgctgcaccttgccgccgcatggggcatcgtgccagtccaccacaacttctggatggac
agggcaggctatgcccccggcgacgagtgggccatcgaccacgtggacgaaatcgacgca
ctcatgaagcgcgtcgaagcgctgcgcgaaccactcgtggacggcacgttcatcagcatc
gactcgtccaccacccgcgacatcgacgacgccttcgacatctcgccctctcccgaggga
gggtggatactgcgcctcgtgctggcgtcccccgtcacagggtgggacttcgacgggccg
ctggacagggccgtcctgcgccgtgccaccagcatctacctgcccgaaaggtcgcatcac
atgatgccggagacgctggggacagacgcctacagccttctcgcaggtcaggacagaccc
gcactgctggtcaccttcgacatcgcggccgacgggtcactccgttccaccacccccgcc
accgggtgggtgcgcctcgccgccaacctcacctacaccgaatgtgaggcctgcctcacc
ggagagggcgatgcaggtcgcgccgccccgcacgccgaccgcctcgcgctggcggatgcg
ctggcgagagtgcggcagcagttgcgcgtggctgccggtgccgtgatcatcgaacgcgac
gaccccaaggtcaccctcgaaggcgagggctgcgccgtgaaggtgcatgtggccccgccc
gacgagaccccgcgcgcgcagcttctcgtctcggagatgatgatccttgccaacgccgcc
atcgcctcatggggtgcggaacgtggcatcactctcctccaccgcacgcaggacgtgggc
atcccgcgcgaatatgccggggtatggaaccagccgcacgacatcgcacgggtggtcaag
gcactggcccctgcccacctcgaacccgttgccaagccccacgcgggtatcgccgtgccc
gcctacagtcccgtgacctcgccgttgcggcgctaccccgaccttgtcaacgaggcgcag
gtcatccattatctgacccacggcaccccgcgctggtcgcgtgaagaggtggaggccatg
ctgccgcttctcggtgcgcgtcttgatgccgcggggcaggtgcaacgcttccgcccccgc
tactggaagctcttctacatccggcagcagggtgacaagacatggcacgaggccgtggtc
accgaagagaacgacgccttcgtcaccatcagcctgcctgaagtgcagattttcgtgcgg
ggcagacggtccaccttcggcgacaaggtctatccgggccagcatttcaatgtacgactc
ggcaaggtgcatccgctcaacaacgagattcagatagtggacgccatggaaggctag
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