Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_0130
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Entry
DvMF_0130 CDS
T00816
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm03030
DNA replication
dvm03430
Mismatch repair
dvm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DvMF_0130
03430 Mismatch repair
DvMF_0130
03440 Homologous recombination
DvMF_0130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dvm03032
]
DvMF_0130
03400 DNA repair and recombination proteins [BR:
dvm03400
]
DvMF_0130
Enzymes [BR:
dvm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DvMF_0130
DNA replication proteins [BR:
dvm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DvMF_0130
DNA repair and recombination proteins [BR:
dvm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DvMF_0130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
ACL07091
UniProt:
B8DNN4
LinkDB
All DBs
Position
complement(143616..147137)
Genome browser
AA seq
1173 aa
AA seq
DB search
MSDFVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQFGI
KPIIGCEVYVANDHTDKTSELARVRHHLVLLARDNEGYHNLVKLVSHGFLHGFHYKPRVD
MDLLRQYSGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQSNGLKE
QDELNEKLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMRFETKE
LYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGMTLEDEFRRLS
REGLKRRLERHPNRDTIDHDLYWKRLELELDVIGQMGFPGYFLIVQDFINWAKDNGIPVG
PGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERRRTEVIRYVG
EKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMTVKKAIDAEP
DLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLYRGKKGEIVTQ
FDMKMVEKVGLVKFDFLGLRTMTLVQDSLDEIARQGKTPPDLDTLALDDAETYELYSRGD
TDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIKRKHGEVPVTYP
LPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMGKKNAEEMGQQRIKFVE
GAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHFPTEFMAALLTS
EMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVHEGAIVFGLGGIKNVGDEAIREIV
DAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGCTRAGMLAALDNVVSKAQ
KRLKDKESNQVSLFTMVPEEPAVCPGIGFDCEEQQAQEWDDDQKLRFEKEALGFFLTSHP
LQPYRKELFRLRLTPLEETRDMAPGMSLKTAVLVTGIKEHMTKKGARMAFLQVEDLTASG
ECVFFPEPYAEFRELLKSDQPLLLEATISKQQNDDGGRNGGGGDGMSGSAGMTEDDDDTP
REIKLLGDKVIPLARACGASDQPVTIDMPLPRVEPASLAALRAILERHRGPVPVNVRLVV
DESECLLQFGPQWMVQPGPAFETDIAHWTEGPE
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatttcgttcatctgcattgccacaccgaatacagcctgctcgacggggccatc
cgcctgaaggacctgtgcgccaaggcggtggacttcggcatgcccgccgccgccatcacc
gaccacggcaacctttacggcgcagtctatttctacaatacctgcaagcagttcggcata
aagcccatcatcggctgcgaagtctacgtggccaacgaccacacggacaagacctcggag
ctggcccgcgtgcgccaccatctggtgcttctggcgcgtgacaacgaaggctaccacaac
ctagtcaagctggtatcccacggctttctgcacggctttcactacaagccgcgcgtggac
atggacctgctgcgccagtactcgggcggcatcaccgccctttccgcctgcctggccgga
caggtgccgcgcgcgctcctgcgcagcggcatggacgacgccatccgcatcgcccgcgaa
tacgaagccatctaccccggcaacttctatctcgaattgcagtccaacggcctgaaggaa
caggacgagctgaacgagaagctcatcgagctcgccgaccacaccgggctgcccctggtg
gccaccaacgactgccactacctggaagccagcgacgtggaagcccacgacgtgctgctg
tgcatccagacccaggccaaggtggacgacgagcgccgcatgcgcttcgagaccaaggag
ctgtactacaagtcgccggaggaaatggccaaggcgttcgcccacgtgcccgacgccgtg
gccaacaccgggcgcatcgccgagcagtgcgcggtgaagttcgaattcggcaagtacgtc
tttcccgtgtatgccctgccagagggcatgaccctggaggacgagttccgccgcctctcg
cgcgaagggctgaagcgccgcctggaacgccaccccaaccgcgacaccatcgaccacgac
ctgtactggaagcgccttgagctggaactggacgtcatcggccagatgggctttcccggc
tacttcctcatcgtgcaggacttcatcaactgggccaaggacaacggcattcccgtaggc
ccggggcgtggttccgccgccggttcgctggtggcgtggtcgctgcgcatcaccaacctc
gatcccatcccgtacaacctgctgttcgaacgcttcctgaacatcgaacgcgtgtccatg
cccgatatcgacgtggacttctgcgaacgccgccgtaccgaggtcatccggtacgtgggc
gagaagtacggcgaagacatggtggcgcagatcaccaccttcgggaagatgaaggcgaaa
gcggtggtgcgcgacgtgggccgcgccctgggcatgacctttgccgagaccgaccgcatc
gccaagctggtgcccgaagacctgaagatgacggtcaagaaggccatcgacgcggagccg
gacctggccgcgctgtacaagaccgatccgcagatccgcaagctgctggacgtttccatg
cggcttgaagggctttcgcgccatgcctccacccacgcggcgggcgtcgtggtttccgac
aggcccatgcgcgagtacctgccgctgtaccggggaaagaagggtgaaatagtcacccag
ttcgacatgaagatggtcgagaaggtcgggctggtgaagttcgactttctgggcctgcgc
accatgaccctggtgcaggattcgctggacgagatcgcccggcagggcaagaccccgccc
gacctcgacaccctggccctggacgacgcggaaacctacgaactgtactcgcgcggggac
accgacggcatcttccaggtggaaagttcgggcatgcgccagtacctgcgcatgctcaag
ccgtcctgcttcgacgacgtcatcgccatgctggccctgtaccggcccggcccgctgggt
tcgggcatggtggacgaattcatcaagcgcaagcacggcgaggtgcccgtcacctacccc
ctgccctcgctggaagactgcctgcgcgatacctacggcgtcatcgtgtaccaggaacag
gtgatgcagatcgcccagatcgcggcgggctacaccctgggcggcgcggaccttctgcgc
cgcgccatgggcaagaagaacgccgaggaaatgggccagcagcgcatcaagttcgtggag
ggcgcgcagaagaacggagttcccaaggccacggccgacgaaatcttcgacctgatggaa
aagttcgcggagtacggcttcaacaagtcgcacagcgcggcctatgcgctcatctcgtac
tacaccgcgtacctgaaggtacactttcccacggaattcatggccgccctgctcacgtcg
gaaatgggcaaccaggacaagctgctgaagtacgtggccgcgtgcaaggacatgggcatc
gccgtgttgcagcccaacgtgcaggccagccgccgcgaattcaccgtgcacgagggggcc
atcgtcttcggccttggcggcatcaagaacgtgggcgacgaagccatccgcgaaatcgtg
gatgcccgcgaggaaggcggggtgttcgcctcgctgctggacctgtgcatgcgcgtgaac
ctgcgcaaggtgaccaagcgcgtgctggaaagcctgatcaagggcggcgcgtgcgattgc
ctgggctgcacccgcgcgggcatgctggccgcgctggacaacgtggtcagcaaggcccag
aagcgcctgaaggacaaggaatccaaccaagtttcgctgttcaccatggtgccggaagaa
cccgccgtgtgccccggcatcggcttcgactgcgaagagcagcaggcccaggagtgggac
gacgaccagaagctgcgcttcgaaaaggaggcgctgggcttcttcctgaccagccatccg
ctccagccctaccgcaaggaattgttccgcctgcgccttaccccgctggaagaaacgcgg
gacatggcccccggcatgtcgctgaagaccgccgtgctggtcaccggcatcaaggagcac
atgaccaagaagggcgcgcgcatggccttcctgcaggtggaagaccttaccgcgtccggc
gaatgcgtgttctttcccgaaccgtacgcggagttccgcgaactgctgaagtccgaccag
ccgctcttgctggaggccaccatcagcaagcagcagaacgacgacggcggcaggaacggc
gggggcggtgacggcatgtccggttcggcaggcatgaccgaagacgacgacgacaccccg
cgcgaaatcaagctgctgggcgacaaggtcattccgctggcccgcgcctgcggcgccagc
gaccagcccgtgaccatcgacatgcccctgccccgcgtggagcccgccagccttgccgcc
ctgcgcgccattctggagcggcatcgcggcccggtgccggtgaacgtgcgcctggtggtg
gacgagtccgaatgcctgttgcagttcggcccgcagtggatggtccagcccggcccggcg
ttcgagacggatatcgcccactggaccgaaggcccggagtag
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