Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_0427
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Entry
DvMF_0427 CDS
T00816
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm02020
Two-component system
dvm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DvMF_0427
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DvMF_0427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvm03021
]
DvMF_0427
Transcription machinery [BR:
dvm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DvMF_0427
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LexA_DNA_bind
HTH_IclR
TetR_N
Motif
Other DBs
NCBI-ProteinID:
ACL07384
LinkDB
All DBs
Position
complement(501115..502548)
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AA seq
477 aa
AA seq
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MALELRQQLKLTQQLVMTPQLQQAIRLLQLSRLELVETVQQEMLENPFLEEAQDEGPQVE
TPDPREAATAAADVAYDREIARDADWEDYLGDFASTSRQSTVRETEMPEEMTSFEARYAA
KPSLEGHLMWQLRLSSLTERQKDIGEVIIGNIASSGYLHATVDDIAEMAGVTPGEVESVL
HAVQRFDPVGVSARTAQECLLVQIEMLGYTRDKVLVELVRDHLEDLEKRRYKPLLRKFRL
TMEDLKEYLDLIQTLDPMPGASYGGGDPQFVSPDVYVYKYDDDFIIMLNEDGLPHLQLST
MYERSAAAAASAGEREYFQEKMRSASWLIKSLYQRQRTLYKVVESIVKYQRGFFEDGVSR
LKPLILKDIADDIGMHESTVSRITTSKYVATPHGIMELKFFFNSALELDDGSQVGSESVK
ALIKKLIADEDPREPLSDERIGEILKDQLKVNIARRTVAKYRTAMDIPSSSKRKELF
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggcattggaactcaggcaacagctcaagctcacccagcaattggtgatgacgccgcaa
ctgcaacaggccatccggctgttgcagctttcgcggctggagcttgtcgagacggtgcag
caggaaatgctggaaaacccgtttctggaggaagcccaggacgaggggccgcaggtcgag
actcccgacccgcgcgaagccgccaccgcagctgccgacgtagcctatgaccgtgaaatc
gcccgcgatgccgactgggaagattaccttggcgacttcgccagcaccagccgccagtcc
acggtgcgtgaaacggaaatgcccgaggaaatgacctcgttcgaggcgcgctacgccgcc
aagccctcgctggaagggcacctgatgtggcagttgcgcctgtcctcgctgaccgagcgc
cagaaggacattggcgaggtgatcatcggcaacatcgcatcgtcgggctacctgcacgcc
acggtggacgacatcgccgaaatggcgggcgtgacccccggcgaggtggagtccgtgctg
cacgccgtgcagcgcttcgaccccgtgggggtgtccgcgcgcacggcgcaggaatgcctg
ctggtgcagatagagatgctgggctacacgcgcgacaaggtgctggtggaacttgtgcgc
gaccacctggaagacctggagaagcgccgctacaagccgctgttgcgcaagtttcgcctt
accatggaggacctgaaggaatacctggacctcatccagaccctggaccccatgcccggc
gccagctatggcgggggcgacccgcagttcgtcagccccgacgtgtacgtctacaagtac
gacgacgacttcatcatcatgctcaacgaggacgggctgccgcacctgcaactgagcacc
atgtacgagcggtccgccgcagcggctgcatctgcgggcgaacgcgaatatttccaggaa
aagatgcgctccgcctcgtggctcatcaagagcctgtaccagcgccagcgcacgctgtac
aaagtggtggaatccatcgttaagtaccagcgcggctttttcgaggacggcgtttcgcgc
ctgaagccgcttatcctgaaggacatagccgacgacatcggcatgcacgaatccaccgtc
agccgcatcaccaccagcaagtacgtggccacgccccacggcatcatggagttgaagttc
ttcttcaacagcgcgctggagctcgacgacggcagccaggtgggttccgagagcgtcaag
gcgctgatcaagaagctgattgccgacgaagaccctcgcgagccgctgagcgacgagcgc
atcggtgaaattctgaaggatcagctcaaagtcaatattgcccgcaggaccgttgcgaag
tatcgtactgccatggacattccctcctcttccaagcggaaggaactgttctga
DBGET
integrated database retrieval system
