Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_0491
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Entry
DvMF_0491 CDS
T00816
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DvMF_0491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvm03021
]
DvMF_0491
03019 Messenger RNA biogenesis [BR:
dvm03019
]
DvMF_0491
Transcription machinery [BR:
dvm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DvMF_0491
Messenger RNA biogenesis [BR:
dvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DvMF_0491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA
S1CSD-TOTE-2
ATPase_2
AAA_14
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
ACL07448
UniProt:
B8DKL9
LinkDB
All DBs
Position
575162..576412
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AA seq
416 aa
AA seq
DB search
MNLSELKIKSMSELMELAEQYNVEGASGMRKQELIFALLQACASQNGAIYGDGVLEILPD
GFGFLRSPLCSYMPGPDDIYVSPSQIRRFNLRKGDVVSGQIRPPKEGERYFALLKVTEIG
FEPPENAKNLVLFDNLTPIYPDRQFIMENGDKNYSSRVIDMMAPVGRGQRGLIVAPPRTG
KTILLQTIANSINANHPDAYLIVLLIDERPEEVTDMERTVKNAEVVSSTFDEPPQRHVQV
CEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKRFFG
AARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLERHLAEKRVFPAIDINR
TGTRKEDLLLSDEVLNRVWILRKILAPMSPIDSMEFLLDKMRATKSNREFLNVMNK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcggaactcaagatcaagagcatgagcgagctcatggagcttgccgagcaa
tacaacgtcgaaggcgccagcggcatgcgcaagcaggagctgatcttcgccctgctccag
gcctgtgcctcgcagaacggcgccatctacggcgacggcgtgctggagatactgcccgac
ggtttcggctttctgcggtcgccgctgtgcagctacatgcccggccccgacgacatctat
gtgtcgccgtcgcagattcgccgcttcaacctgcgcaagggtgacgttgtttccggccag
atacgcccgcccaaggaaggcgaacgctacttcgccctgctgaaggtgaccgagatcggc
ttcgagccgccggaaaacgccaagaatctcgtcctgttcgacaacctgacgcccatctac
cccgaccgccagttcatcatggagaacggggacaagaactactccagccgcgtcatagac
atgatggcccccgtgggccgcggccagcgcggcctgatcgtggcgcccccccgcaccggc
aagaccatcctgctccagaccatcgccaactccatcaacgccaaccatccggatgcgtac
ctcatcgtgctgctcatcgacgagcggcccgaggaagtgaccgacatggagcgcacggtg
aagaacgccgaagtggtcagctccaccttcgacgagccgccgcagcgccacgtgcaggtc
tgcgaaatggtgctggaaaaggccaagcgcctggtggaacgcaagcgcgacgtggtcatc
ctgctcgactccatcacccgcctgggccgtgcgtacaacgccgtcaccccgtcctcgggc
cgcgtgctgtccggcggtctcgacgccaacgccctgcaacgccccaagcgcttcttcggc
gcggcgcgcaacatcgaggaaggcggcagcctgaccatcatcgccaccgccctcatcgac
accggctcgcgcatggacgaagtgatcttcgaagagttcaagggcaccggcaacatggaa
atctacctggaacgccaccttgccgaaaagcgcgtgttcccggctatcgacatcaaccgc
accggcacccgcaaggaagacctgctactgtcggacgaggtgctcaaccgcgtgtggatc
ctgcgcaagattctggcgcccatgtcgcccatcgacagcatggaattcctgctggacaag
atgcgcgccaccaagagcaaccgcgaattcctgaacgtgatgaacaagtaa
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