Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_0494
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Entry
DvMF_0494 CDS
T00816
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DvMF_0494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvm03021
]
DvMF_0494
Transcription machinery [BR:
dvm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DvMF_0494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_ner
PXA
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ACL07451
UniProt:
B8DKM2
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All DBs
Position
complement(580069..581841)
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AA seq
590 aa
AA seq
DB search
MGNIKDIQQIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLEIAIVDTE
KDGKKISVSPGESEEEPSGEPGLDLVEDEESADYSSRSTDPVRMYLREMGAVPLLDRDGE
VQIAKKIELGEQDVLYALVEVPVAVEELINVGEDLKQNRIKLKDVVKTIEEDDPSEDEMN
QRSRVILLLDEIKHTYKKKRKVYAKLDDCCTLERRVTAIQKEILGFKEDIVNRLRDIKLE
KTLIDRIIETVEDYVRQMHNCQRDLSAYILSTGKTQVEIQDIFRMLEAREMNPVAASAAL
GMTVEELFSFKEMIIGKIEILNRLQDKCCHNVTDLEEVLWRIKRGNTHAMRAKQELIRSN
LRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAI
ADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKE
PISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLSEQIASVLADLTPREEQVLRKRF
GIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQMLRSYYES
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgggtaacatcaaggatattcagcagatcaagtcgctcatcgccaaaggcaaggtaagc
ggctttctgaccttcgacgaggtcaacaaggccctgccggcagaggtcaacacgcccgag
cagatcgaggagatcatcggtatcttcgaccagctggagatcgccattgtcgataccgag
aaggacggcaagaagatctccgtgtcgcccggcgagtcggaagaggaaccttccggcgaa
ccggggctggacctggtggaggacgaggagtctgcggactattcgtcgcgctccaccgat
ccggtgcgcatgtacctgcgcgaaatgggcgccgtgccgctgctggaccgcgacggcgaa
gtgcagatcgccaagaagatcgaactcggcgagcaggacgtgctgtacgccctggtggaa
gtgccggtggcggtcgaggagctgatcaacgtcggcgaagatctgaagcagaaccgcatc
aagctgaaggacgtcgtcaagaccatagaggaagacgaccccagcgaagacgaaatgaac
cagcgttcgcgggtcatcctgctgctggacgaaatcaagcatacctacaagaagaagcgc
aaggtctacgccaagctggacgactgctgcaccctggaacgccgggtgaccgccatccag
aaggaaatcctcggtttcaaggaagacatcgtcaaccgtctgcgtgacatcaagctggaa
aagaccctcatcgaccggataatcgagacggtggaagactacgtgcggcagatgcacaac
tgccagcgcgacctttccgcctacatcctgtccacgggcaagacccaggtcgagatccag
gacatcttccgcatgctggaagcgcgcgagatgaaccccgtggccgcttccgcggcgctg
ggcatgacggtggaagaactgttctcgttcaaggaaatgatcatcggcaagatcgagatc
ctgaaccggctgcaggacaagtgctgccacaacgtgacggacctcgaggaagtgctgtgg
cgcatcaagcgcggcaacacccacgccatgcgtgccaagcaggagctgatccgctccaac
ctgcgtctggtggtcagcattgcgaaaaagtacaccaaccgcggcctgcagttcctggac
ctgatccaggaaggcaacatcggcctgatgaaggccgtggacaagttcgaataccagcgc
ggctacaagttctccacgtacgccacgtggtggatacgccaggccatcacccgcgccatt
gccgatcaggcccgcaccatccgcattccggtgcacatgatcgaaaccatcaacaagctc
atccgcacctcccgctacctcgtgcaggaactggggcgcgaccccacccccgaggaaatc
gccgagcgcatggactaccccatcgacaaggtgaagaaggtgctgaagatcgccaaggaa
cccatctcgctcgaaacgcccatcggcgacgaggaagattccagcctcggcgacttcatc
gaggacaagaaggccgtggccccggcggaagaggtggtcaacaccaagctgtcggagcag
atcgcctccgtcctggccgaccttaccccgcgcgaggagcaggtgctgcgcaagcgcttc
ggcatcggcgaaaagtcggaccacaccctcgaggaagtgggcaagctgttcaacgttacc
cgcgagcgcatccggcagatcgaggccaaggcgctacgcaagctgcgccaccccgtgcgc
agccagatgttgcgttcctactacgaaagctag
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