Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_0904
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Entry
DvMF_0904 CDS
T00816
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvm03016
]
DvMF_0904
Enzymes [BR:
dvm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DvMF_0904
Transfer RNA biogenesis [BR:
dvm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DvMF_0904
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
NTP_transf_3
Motif
Other DBs
NCBI-ProteinID:
ACL07859
UniProt:
B8DP27
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All DBs
Position
1088007..1088822
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AA seq
271 aa
AA seq
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MSGNRRTGPGKAHHRTSPVSDTPGAQAQGTVRCFVGLPLPPQWQDRLAALRDDLHAACAT
ADTTGPGMCDPAPMLLTALADLLRRLHWTPPGNWHLTLRFLGAVPAPRCDEVADALRTIS
FAPLQLAVGKAGVFPARGDPRVLWLGLAQGAAECAALATAVNAALVPLGFTPEDRPFAPH
LTLARLREARREGGQRRAAPPGGESASPPSRPSSHAATDARDALLAAINTRISRAASPWP
VCTVREMVLWRSDPGGGRPVYTPLAVLPSRG
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaaacaggcgaaccgggccgggaaaggcccaccacaggacctcccccgtttcg
gacacgcccggcgcgcaagcgcagggcacggtccgctgtttcgtggggctgccgctgccc
ccgcaatggcaggaccggctggccgcgctgcgcgacgatctgcatgcggcctgcgccacc
gccgatacgaccggccccggcatgtgcgacccggccccgatgctgctgacggcactggcc
gacctgctgcgccgcctgcactggacgccccccggcaactggcacctgaccctgcgcttt
ctgggcgccgtgcccgccccccgctgcgacgaggtggcggacgcgctgcggaccatcagt
tttgcccccctgcaactggccgtgggcaaggccggggtgttcccggccaggggtgacccg
cgcgtactgtggctggggttggcgcaaggcgcagcggaatgcgcggccctggccacggcg
gtcaacgcggcgctggtgccgctggggtttacgccggaggaccgcccctttgctccgcac
cttaccctggcccggctgcgcgaggcccggcgcgaaggcgggcagcgccgtgccgccccg
cccggcggcgaatcggcctccccgccttcccggccctcttcccatgcggcaacggacgcg
cgcgatgccctgctggcggccatcaacacccgcatcagccgcgccgcatcgccgtggccc
gtctgcaccgtgcgcgaaatggtgctgtggcgcagcgatcctggcggtggccgcccggtg
tacaccccactggcggtgctgccctcgcggggctga
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