Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_1404
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Entry
DvMF_1404 CDS
T00816
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DvMF_1404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvm03400
]
DvMF_1404
Enzymes [BR:
dvm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DvMF_1404
DNA repair and recombination proteins [BR:
dvm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DvMF_1404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
HHH_5
AAA_11
Viral_helicase1
PIF1
Helicase_RecD
UvrD-helicase
ABC_tran
AAA_28
nSTAND3
AAA_29
RsgA_GTPase
PhoH
NPHP3_N
MeaB
AAA_16
AAA_22
SLFN-g3_helicase
AAA
T2SSE
DEAD
NTPase_1
CPT
AAA_7
Zeta_toxin
cobW
TsaE
TrwB_AAD_bind
NB-ARC
GpA_ATPase
Pirin
DUF3850
AAA_24
Mg_chelatase
ResIII
SRP54
Flavi_DEAD
AAA_23
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
ACL08352
UniProt:
B8DRR5
LinkDB
All DBs
Position
complement(1715541..1717727)
Genome browser
AA seq
728 aa
AA seq
DB search
MQEAQDAPEQLSGVLDRVIFHNEENGYTVLRLRPLPKGDMISVVGHMVSPQPGASLKLVG
RWVNNPRFGRQFSMENYENLLPASVEGIRHYLGSGLIKGVGESMAARIVDAFGEDTFRVL
DEEPDRLLRVSGVGGKTLERIKAGWSDHQGIRDLIMFLQPHGVSTAYAVRIYRHYGQQAL
AVVRENPYRLAMDIHGIGFHTADTVAEKLGFSRDSELRAEAGTLYTLQRLNDDGHVYVPH
DALITHTSDQLDIRADLVEDALRTLEIEERIVIEEMDGELGVFLSRYHHYETKIAYYLQR
VLRSPKAVHFENPEAVIAEVLAKLSITLAPEQLEAVRTATRSKVMVLTGGPGTGKTTIIN
AIIKVFAETRAKILLAAPTGRAAKRMSETSGRESKTIHRLLEYSPKEDGFARNEDNPLAC
GLLVVDEASMMDTMLMYHLLKAVPLGATLLFVGDVHQLPSVGPGNVLRDVIASGVVPVVE
LVEVFRQAAESEIICNAHRINHGEVPPLESSRDRLSDFYFIRQDDPEKAVEMIVELVRDH
IPRRFGLHPVNDIQVLTPMHKGAVGAGNLNVRLQQALNGQTLCVQRGERQYRLDDKVMQI
RNNYDKDVFNGDIGRICLVDPKERQLTVRFDERNVPYAWEELDEIVPAYAISVHKSQGSE
YPAVVIPVLTQHYMLLQRNLIYTGVTRGKRLVVLVGEPRALAMAVKNNRMHKRHTRLARR
LALGVGVG
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaggcgcaggacgccccggaacaactttccggcgtgctcgaccgcgtcatcttc
cacaacgaggaaaacggctacaccgtgctgcgcctgcgcccgctgcccaagggcgacatg
atcagcgtggtggggcacatggtttcgccgcagccgggggcctctttgaagctggtgggc
cgctgggtgaacaacccgcgcttcgggcggcagttttccatggaaaattacgagaacctg
ctgcctgcctctgttgagggcatccgccattatctcggctccggcctcatcaagggcgtg
ggcgaatccatggccgcgcgcatcgtggatgccttcggcgaggacacctttcgcgtgctg
gacgaagagccggacaggctgctgcgcgtcagcggcgtgggcggcaagacgctggagcgc
atcaaggcgggctggtccgaccatcagggcatccgcgacctgatcatgttcctgcaaccg
cacggggtcagcaccgcctatgccgtgcgcatctaccgccactacgggcagcaggccctg
gcggtggtgcgcgagaatccctaccgcctggccatggacatccacggcatcggctttcat
accgccgacaccgtggcggaaaagctgggcttctcgcgcgacagcgaactgcgggcagag
gcgggcaccctgtacaccctgcaacgcctgaacgacgacggccacgtctacgtgccgcac
gacgcgctgatcacccacacctcggaccagctggacatccgcgccgacctcgtggaggac
gccctgcgcaccctggagatagaggagcgcatcgtcatcgaggaaatggacggcgagctc
ggggtgttcctttcccgctaccatcattacgaaaccaagatcgcctactacctgcaacgg
gtgctgcgttcgccgaaagccgtgcacttcgagaacccggaagccgtcatcgccgaggtg
ctggccaagctgtccatcacccttgcgccggagcagctggaggccgtgcgcaccgccacc
cgttccaaggtcatggtgcttaccggcggccccggcaccggcaagaccaccatcatcaac
gccatcatcaaggtctttgccgaaacgcgcgccaagatcctgctggccgcgcccacgggc
cgcgccgccaagcgcatgtccgagaccagcgggcgcgaatccaagaccattcaccgtctg
ctggagtacagccccaaggaggacggtttcgcccgcaacgaggacaaccccctcgcctgc
ggcctgctggtggtggacgaggcgtccatgatggacaccatgctcatgtaccacctgctg
aaggccgtgccgctgggcgccacgctgctcttcgtgggcgacgtgcaccagctgccctcg
gtggggccgggcaacgtgctgcgcgacgtcatcgcctccggcgtggtgccggtggtggaa
ctggtggaggtgttccgccaggccgccgaaagcgagatcatctgcaacgcccaccgcatc
aaccacggcgaggtgcctccgctggaatcctcgcgcgaccggctgtccgacttctacttc
atccggcaggacgaccccgagaaggccgtggagatgatcgtggaactggtgcgcgaccac
atcccgcgccgcttcggcctgcatcccgtcaacgacatccaggtgcttacccccatgcac
aagggcgcggtgggcgcaggcaacctgaacgtgcgcctgcaacaggccctgaacggccag
accctgtgcgtgcagcgcggcgagcgccagtaccgtctggacgacaaggtgatgcagatc
cgcaacaactacgacaaggacgtcttcaacggcgacatcgggcgcatctgtctggtggac
cccaaggagcgtcagctcacagtgcggtttgacgagcgcaacgtgccctatgcctgggaa
gaactggacgagattgtccccgcctacgccatctcggtgcacaagtcgcaggggtccgaa
taccccgccgtggtcatccccgtgctgacacagcattacatgctgctgcaacgcaacctc
atctacaccggcgtcacccgcggcaagcgcctagtggtgctggtgggcgagccgcgcgcc
ctggccatggccgtcaagaacaaccgcatgcacaagcgccacacccggctggcccggcgg
ttggccttgggtgtgggggtggggtaa
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