Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_1456
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Entry
DvMF_1456 CDS
T00816
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DvMF_1456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvm03021
]
DvMF_1456
03400 DNA repair and recombination proteins [BR:
dvm03400
]
DvMF_1456
Enzymes [BR:
dvm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DvMF_1456
Transcription machinery [BR:
dvm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DvMF_1456
DNA repair and recombination proteins [BR:
dvm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DvMF_1456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ACL08404
UniProt:
B8DLM8
LinkDB
All DBs
Position
1780231..1784388
Genome browser
AA seq
1385 aa
AA seq
DB search
MTLDDLFTVRGSSANVANIRNLKAIQISIAAPESIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGSTNLAKMQVISEDQYLQVIDHYGED
ALVVGMGAEAVRSLLEELNLEELRAMLREESQATKSQTKKKKLTKRLKIVEAFLESANKP
EWMVMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEE
VVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSTNNILSPANGSPVIVPSQDIVLGLYYMTVERSFEKGEGMAFCAPWEVV
AAYDSGSVSLHARVKVRMEDGKTVDTTPGRILVWEVLPKGVDFEFVNCTLTKKNIARLVG
AAYRDAGTKAAVILCDRLKDVGYEYATRAGITIGVKDLRIPSKKKAMLEASQNEVDDIER
QYRDGIITRTEKYNKVVDVWTKATQDISNEMTKEISHDILVDPKTGKQEVNSSFNPIFMM
STSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLDVLQYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVVQDVIVSELDCGTVDGIEIGHFVKGGDIKVRLADRVLGRVLL
YPVFDPETRELLFPENTLIDENVAQTLEATGISTVTIRSALTCQSERGVCARCYGRDLAR
GHLVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSIVSQHPGRVILSRVKA
VRNRDGQMMVLGKSGQIAIVDDQGREREKYILPNGSRLNVADGSEIKKGVILAEWDPFNE
PFVSEVEGTVKFTDIIEGKTYQEKMDDATRMTTQSIIEYRTTNFRPSISICDENGDPKIR
SGNLPATYSLPVGALIMVKAGQEVQAGDIIARKPRESSKTKDIVGGLPRVAELFEVRKPK
DMAVVSEIDGTVTFAGETKGKRKLVVTPETGEAKEYLVPKGKHITVSDGDFVEAGELLTE
GHPELHDILRTKGEKFLARYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLRKITVLDPGGT
SFLVGEQVDKGEFRHENSRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVL
TEASLRGKMDYLRGLKENVIVGRLIPAGTGYREYVHSDISVPEQKERPDKFLEDLEDNPL
LVDIF
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgaccttagacgatctgttcaccgtccggggctcgtcggccaacgtcgcgaacatccgc
aacctgaaggcgatccagatctccatcgccgcgccggaaagcattcgcgaatggtcgtac
ggcgaggtgaagaagcccgagaccatcaactaccgcaccttcaagcccgagcgggacggc
ctgttctgcgccaagatcttcgggcccgtgaaggactacgagtgcaactgcggcaagtac
aagcgcatgaagcaccgtggcatcgtgtgcgaaaagtgcggggtcgaggtcatcgcctcc
aaggtgcgccgcgaacgcatgggccacatcgaactggccgcgcccgtcgcgcacatctgg
ttcctgaagaccctgccctcgaagatcggcaccctgctcgacatgaccatggccgacctc
gagaaggtgctgtacttcgactcgtacatcgtgctcgatccgggcagcaccaacctcgcc
aagatgcaggtcatctccgaggaccagtaccttcaggtcatcgaccactacggcgaggac
gcccttgtcgtgggcatgggcgccgaagccgtgcgcagcctgcttgaggaactgaacctc
gaggaactgcgcgccatgctgcgcgaagaatcgcaggccaccaagtcgcagaccaagaag
aagaagctcaccaagcgcctgaagatcgtcgaggcgttcctggagtcggccaacaagccg
gaatggatggtgatggaagtcatccccgtcattccgcccgagctgcgccccctggttccg
ctcgacggcggccgcttcgccacgtcggacctgaacgacctgtaccgccgcgtcatcaac
cgcaacaaccgcctcaagcggctgatggaactgggcgcgcccgacatcatcatccgcaac
gaaaagcgcatgttgcaggaagccgttgacgccctgttcgacaacggacgccgtggccgc
gccatcaccggcaccaatggtcgcccgctgaagtcgctgtcggacatgatcaagggcaag
cagggccggttccgccagaacctgctcggcaagcgcgtggactactccggccgttcggtc
atcgtggtgggtccgaagctcaaattgcaccagtgcggcctgcccaagaagatggcgctg
gaactgttcaagcccttcatctattccgagctcgaaaagagaggcctggcctccaccatc
aagagcgccaagaagatggtggagcgcgaggaactggtggtgtgggacatcctggaagag
gtggtgcgcgagtaccccatcctgctcaaccgcgcccccaccctgcaccgtctgggcatc
caggccttcgaaccgctgctggtcgaaggcaaggccatccagctgcacccgctggtctgc
tcggcctacaacgccgacttcgacggcgaccagatggccgtgcacgtgcccctttcggtc
gaagcgcagatcgaatgccgcgtgctcatgatgagcaccaacaacatcctttccccggcc
aacggttcgccggtcatcgtgccctcgcaggacatcgtcctcgggctgtactacatgacc
gtggagcgttcgttcgaaaagggcgaaggcatggccttctgcgccccgtgggaagtggtg
gcggcctacgattccggctccgtctcgctgcatgcgcgcgtcaaggtgcgcatggaggac
ggcaagaccgtggacaccacccccggccgcatcctggtctgggaagtgctgcccaagggc
gtggacttcgagttcgtcaactgcaccctgaccaagaagaacatcgcccgtctggtgggc
gccgcctaccgtgacgcgggcaccaaggccgccgtcatcctgtgcgaccgcctgaaggac
gtgggctacgaatacgccacgcgcgcgggcatcaccatcggcgtgaaggacctgcgcatt
ccgtccaagaagaaggccatgctcgaagcctcgcagaacgaggtggacgacatcgagcgc
cagtaccgcgatggcatcatcacccgtaccgaaaagtacaacaaggtggtggacgtctgg
accaaggccacccaggacatctccaacgagatgaccaaggagatctcgcacgacatcctc
gtggaccccaagaccgggaagcaggaagtgaacagcagcttcaacccgatcttcatgatg
tccacctcgggcgcgcgaggcaaccaagaccagatgcgccagcttgcaggcatgcgcggc
ctgatggccaagccttcgggcgaaatcatcgaaacgcccatcacctcgagcttccgcgaa
ggcctcgacgtgttgcagtacttcaactccacccacggcgcgcgaaagggccttgccgac
accgcgctgaagacggcgaactcgggttaccttacccgccgcctggtggacgtggtgcag
gacgtcatcgtcagcgagcttgactgcggcaccgtggacggcatcgagatcggccacttc
gtcaagggcggcgacatcaaggtgcgcctggccgaccgcgtgctgggccgcgtgctgctg
taccccgtgttcgaccccgaaacccgcgaactgctgttccccgaaaacacgctgatcgac
gaaaacgtggcccagaccctggaagccacgggcatcagcacggtgaccatccgttcggcc
ctgacctgccagagcgagcgcggcgtgtgcgcccgctgctacgggcgcgaccttgcgcgc
ggccacctcgtcaacatcggcgagaccgtgggcatcatcgccgcccagtccatcggcgaa
ccgggcacccagctcaccatgcgcacgttccacatcggcggcaccgcgtcgcgcgaaatc
gaacgttccagcatcgtgtcgcagcacccgggccgcgtgatcctgtcgcgcgtcaaggcc
gtgcgcaaccgcgacggccagatgatggtgcttggcaagagcggccagatcgccatcgtg
gacgaccagggccgcgaacgcgaaaagtacatcctgcccaacggttcccgcctgaacgtc
gccgacggcagcgagatcaagaagggcgtcatcctggccgaatgggacccgttcaacgaa
ccgttcgtctcggaagtggaaggcacggtcaagttcaccgacatcatcgagggcaagacc
taccaggaaaagatggacgacgcgacgcgcatgaccacgcagtcgatcatcgagtaccgc
accaccaacttccgtccgtccatctccatctgcgacgaaaacggcgaccccaagatacgc
agcggcaacctgcccgccacgtattcgctgcccgtcggcgcgctgatcatggtgaaggcc
gggcaggaagtgcaggccggcgacatcatcgcgcgcaagccgcgtgaatcgtccaagacc
aaggacatcgtgggtggtctcccccgcgtggccgaactgttcgaagtgcgcaagcccaag
gacatggccgtggtgtccgaaatcgacggcacggtcacctttgccggtgaaaccaagggc
aagcgcaagctggtggtcacccccgaaacgggcgaggccaaggaatacctggtgcccaag
ggcaagcacatcaccgtttccgacggcgacttcgtggaagccggtgaactgctgaccgaa
ggccatccggaactgcacgacatcctgcgcaccaagggcgagaagttcctggcccgctac
ctggtggacgaaatccaggaagtgtaccgcttccagggcgtgggtatcgacgacaagcac
atcgaagtcatcgtgcgccagatgctgcgcaagatcaccgtgcttgatccgggcggcacc
agcttcctggtgggcgagcaggtggacaagggcgaattccgtcatgaaaactcccgcgcc
atgggcgaaggccgcaccccggccactgccgaaccgctggtgctcggcatcacccaggct
tcgctgaccacctcgtcgttcatctcggcggcgtcgttccaggaaaccaccaaggtgctg
accgaagcctctctgcgcggcaagatggactacctgcgcggcctgaaggaaaacgtcatc
gtgggtcgcctgatccccgccgggaccggctaccgcgaatacgtgcactccgacatctcg
gtgccggaacagaaggaacgcccggacaagttcctggaagacctggaagacaatccgctg
ctggtggatatcttctag
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integrated database retrieval system
