Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_1967
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Entry
DvMF_1967 CDS
T00816
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm03420
Nucleotide excision repair
dvm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DvMF_1967
03430 Mismatch repair
DvMF_1967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvm03400
]
DvMF_1967
Enzymes [BR:
dvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DvMF_1967
DNA repair and recombination proteins [BR:
dvm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DvMF_1967
MMR (mismatch excision repair)
Other MMR factors
DvMF_1967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
DEAD
AAA_12
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACL08910
UniProt:
B8DQ46
LinkDB
All DBs
Position
complement(2430284..2432653)
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AA seq
789 aa
AA seq
DB search
MIDYRNELNPAQYQAATTLEGPLLVIAGAGSGKTRTIVYRLANLVEQGVPASAILLLTFT
RKSAREMLHRAGRLLEHSATAAVHGGVHGVTGVQGGTFHAFAYSVLRQFRPSGYEAGDLT
VMDGADIVDAVRHCKDNQGIGKGDRSFPRTQNIVGLISKSRNKELDIDEVIRREAFHLLV
HAEGIGRIAAAYHAYRREHGLLDYDDLLFELERLLRERADVLDWCRARFRYIMVDEYQDT
NLVQARLVHLLAGEGGNVMAVGDDAQSIYAFRGADVRNILDFPKLFPAAQIIKLEENYRS
VQPVLDLTNAILAEAPQAYRKKLFAAREGGDRPQVVRPLSDLTQASLVVSRIVEFLRSYP
PHDIAVLFRAGYQSYHVEVQLNKLGVKFRKYGGLRYSEAAHVKDVLSYARLVLNPLDLPA
FQRIAAMSKGVGPKTTLKLYDVARQGNPEATSRACLRYPELRADLDLLDGLRKRPHTPTS
LLEEVMEHYKPRMEAAFPDDWPRRQQGLEQLLQIAASYRDLDLFISDLSLEDPGEEEENR
DSVVLSTIHSAKGLEWGAVLLIDLVEERFPSRHAIARAEDFEEERRLMYVACTRARDHLC
LFVPASLYSRGDGGNQPAVPSPFVRELPAHLFDEMHESYSGGLMRRDAPNGQTGQRGAGF
GGGRSGGGGFAQGNRFDGAPGIPRPPMFAEGTTPGRAGGGAGRPLPPTAYPGGAQPGAQG
GGQTGGPPAAAPSLLSGGTAPAGQCGYCTHRIFGRGKIVQHLPPDKYRVNFPGFGLKVIM
AEYLTLESD
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgatagattatcgaaatgaactgaaccccgcccagtatcaggccgccaccaccctagaa
ggccctttgctggtcattgccggtgcgggcagcggcaagacgcgcaccatcgtctaccgg
ctggccaatctggtggagcagggcgtgcccgcctcggccatcctgctgctgaccttcacc
cgcaagtccgcgcgcgaaatgctgcaccgggccgggcggctgctggaacacagcgccacc
gccgccgtgcacggcggcgtgcacggggttaccggggtacagggcggcacctttcacgcc
ttcgcctattcggtgctgcgccagttccgcccctcgggctacgaggcgggcgaccttacc
gtcatggacggcgcggacatcgtggacgcggtacgccactgcaaggacaatcagggcatc
ggcaagggcgaccgctccttcccgcgcacccagaacatcgtggggctcatcagcaagtcc
cgcaacaaggaactggacatcgacgaggtgatccggcgcgaggccttccacctgctggtg
cacgccgagggcattggccgcatcgccgccgcctaccacgcctatcgccgcgagcacggc
ctgctggactacgacgacctgctgttcgaactggagcggctgctgcgcgaacgggccgac
gtgctggactggtgccgcgccaggttccgctacatcatggtggacgaataccaggacacc
aacctggtgcaggcccggctggtgcatctgctggcgggcgagggcggcaacgtcatggcc
gtgggcgacgacgcccagtccatctacgcctttcgcggggcggacgtgcgcaacatcctg
gatttccccaagctgttccccgccgcgcagatcattaagctggaagagaactaccgctcg
gtgcagccggtgctggacctgaccaacgccatcctggcggaggctccgcaggcctaccgc
aagaagctgttcgccgcgcgcgaagggggcgacaggccgcaggtggtgcgcccgctcagc
gacctgacccaggcctcgctggtggtgtcgcgcatcgtggaatttctgcgcagctacccg
ccgcacgacatcgccgtgctgttccgggcggggtaccagtcgtaccatgtggaagtgcag
ctgaacaaactgggcgtgaagttccgcaagtacggcgggctgcgctattcggaggcggcc
cacgtcaaggatgtgctgtcctacgcgcgcctggtgctgaacccgctggacctgcccgcg
ttccagcgcattgccgccatgtccaagggtgtggggcccaagaccactctcaagctgtac
gacgtggcccggcagggcaacccggaggccaccagccgcgcctgcctgcgctaccccgaa
ctgcgcgccgacctggacctgctggacggcctgcgcaagcgcccgcacacgcccacctcg
ctgctcgaagaggtgatggagcactacaagccgcgcatggaggccgccttccccgacgac
tggccgcgcaggcagcaggggctggagcagttgctccagattgccgcgtcctaccgcgac
ctggacctgttcatctccgacctgtcgctggaagaccccggcgaggaagaggaaaaccgc
gacagcgtggtgctgtccaccatccattcggccaaggggctggagtggggcgcggtgctg
ctgatcgacctggtggaagagcgctttccttcgcggcacgccattgcccgcgccgaagac
ttcgaggaggagcggcggctgatgtacgtggcctgcacccgcgcccgcgaccacctgtgc
ctgttcgtgcccgccagcctgtacagccggggcgacggcggcaaccagcccgccgtgccc
agcccctttgtgcgcgaactgcccgcccacctgtttgacgagatgcacgaaagctattcc
ggcgggctgatgcgccgcgatgcccccaatggacagacgggacagcgcggggcaggcttt
ggcggcggcaggagcggggggggcggctttgcgcagggaaaccgctttgacggcgcgccc
ggcattccccgtccgcccatgttcgcggaagggaccacgccgggcagggccggggggggc
gcaggccgcccgctgccgccgacggcgtaccccggcggtgcgcagcccggtgcgcagggt
ggcgggcaaaccggcggcccgcctgccgccgcgccttcgctgctgtccggcggcacggcc
ccggcgggccagtgcggctattgcacccaccgcatcttcgggcgcggcaagatcgtgcag
cacctgccgcccgacaagtaccgcgtgaactttcccggtttcggcctcaaggtgatcatg
gccgaatacctgacgctggaatccgactga
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