Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_2125
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Entry
DvMF_2125 CDS
T00816
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DvMF_2125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvm03019
]
DvMF_2125
03009 Ribosome biogenesis [BR:
dvm03009
]
DvMF_2125
Enzymes [BR:
dvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DvMF_2125
Messenger RNA biogenesis [BR:
dvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DvMF_2125
Ribosome biogenesis [BR:
dvm03009
]
Prokaryotic type
rRNA helicases
DvMF_2125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
DNA_binding_2
Motif
Other DBs
NCBI-ProteinID:
ACL09068
UniProt:
B8DQE9
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All DBs
Position
complement(2644383..2645978)
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AA seq
531 aa
AA seq
DB search
METLRFEELSLSKEILKAIEEMGFEETSPIQALAIPHILEGRDVIGQAQTGTGKTAAFGI
PLLERIDPREKDIQGIILCPTRELAIQVAEELTQLASRKRGLYVLPVYGGQPIDRQFKAL
RRGAQVVVGTPGRVMDHMERGTINLSTVRMAVLDEADEMLDMGFRDDIEHILGQVPGEAQ
TVFFSATMPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQKLEALCRVLDL
YNPKRAIVFCSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGIEILVAT
DVAARGIDVDDVEAVVNYDIPNAVEHYVHRIGRTGRAGRSGRAFTFVSGRDFYKLRDIKK
FTKAHIVQHQVPTSSDVATVKTNQLLAEVRRHIEAGELEKYTDIVESFLDEDVTTVDMAA
ALLKLLMRRELGDAVPGGEKTPAGTGAEPGMVRLFLNVGRKMRVTARDIVGAIAGETGIP
GRMIGAIDIRDRVSFVEVPADYAQEVISVMNGNQIRGFRLGVEPATPRDRE
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccttacgctttgaagaattgtccctttccaaggaaatcctgaaggccatcgaa
gagatgggcttcgaagaaacctcgcccatccaggcgctggccatcccccacatcctcgaa
ggccgcgacgtcatcggccaggcccagaccggcaccggcaagaccgccgccttcggcatt
cccctgctggaacgcatcgacccgcgcgaaaaggacatccagggcatcatcctgtgcccc
acgcgcgaactggccatccaggtggcggaagaacttacccaactggcctcgcgcaagcgc
ggcctgtacgtgctgcccgtgtacggcggccagcccatcgaccgccagttcaaggccctg
cgccgcggcgcgcaggtggtggtgggcacgccgggccgcgtcatggaccacatggagcgc
ggcaccatcaacctttccacggtgcgcatggccgtgctggatgaagccgacgaaatgctc
gacatgggctttcgcgacgacatcgagcacatcctgggccaggtgccgggcgaggcgcag
acggtgttcttctcggccaccatgcccccggccatcctcgacatggcccagcgcttcctg
aagacgcccgaattcctcaaggtgacccagaagcaggtcaccgtgcccagcatcgaacag
atctactacgaggtgcggcccttccagaagctggaggccctgtgccgcgtgctggacctg
tacaaccccaagcgcgccatcgtgttctgctcgaccaagcgcggcgtggatgaactgacc
cagcacctgcaggggcgcggctaccaggccgacggcctgcacggcaacctcaaccagtcg
cagcgcgaccgggtgatggcgcgcttccgcagcaacggcatcgaaatcctggtggccacc
gacgtggccgcgcgcggcatcgacgtggacgacgtggaagccgtggtcaactacgacatc
cccaacgccgtcgaacactacgtgcaccgcatcggtcgcacgggccgcgccgggcgttcg
ggccgggcgttcacctttgtttccgggcgcgacttctacaagctgcgcgacatcaagaag
ttcaccaaggcgcacatcgtgcagcaccaggtgcccacgtccagcgacgtggccacggtg
aagaccaaccagctgctggccgaagtgcgccgccacatcgaggcgggcgaactggaaaag
tacaccgacatcgtggaatcgttcctggacgaggacgtgaccaccgtggacatggccgca
gcgctgctgaagctgctgatgcgccgcgaactgggcgacgccgtgcccggcggtgaaaag
acccccgcaggcaccggcgccgaacccggcatggtgcgcctgttcctgaacgtgggccgc
aagatgcgcgtcaccgcgcgcgacatcgtgggtgccatcgcgggcgaaaccggcatcccc
ggacgcatgatcggggccatcgacatccgcgaccgcgtgtcgttcgtggaagtgcctgcc
gactacgcgcaggaagtcatctcggtgatgaacggcaaccagatccggggcttccgcctt
ggggtggagccggcgaccccgcgcgaccgggaatag
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