Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_2252
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Entry
DvMF_2252 CDS
T00816
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DvMF_2252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvm03019
]
DvMF_2252
03009 Ribosome biogenesis [BR:
dvm03009
]
DvMF_2252
Enzymes [BR:
dvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DvMF_2252
Messenger RNA biogenesis [BR:
dvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DvMF_2252
Ribosome biogenesis [BR:
dvm03009
]
Prokaryotic type
rRNA helicases
DvMF_2252
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CARD
Motif
Other DBs
NCBI-ProteinID:
ACL09195
UniProt:
B8DQS6
LinkDB
All DBs
Position
complement(2828773..2831745)
Genome browser
AA seq
990 aa
AA seq
DB search
MTHDPRLEGDAHSAADTDETPSSAPAAADVPAPAVADTPGTTAADTPGTPPPVAASDAPD
EGTPPEISDPAPAIPADTAALAALADDEDPALRLAAEITRIDEPEDALPPVTLANLPPMM
QEAAARAGWTNLMPVQTHALPYIFAKRDLMVQSRTGSGKTGAFLLPLLERLSPDEPAVQA
LILVPTRELALQVEYEARVLFEGTGLNVAAVYGGVGYGKQMDALRDGAHLVVGTPGRVLD
HLLRRTMNLDRIRALVFDEADRMLSIGFYPDMKEIQRYLPKRRISAYLFSATYPPHVLNL
AGEFLSEPRMLSLSHQQVHVAQTQHLYCETKPMDKDRALVRIIESENPTAAIIFCNTKAN
VHYVTAVLQGFGYNADELSADLTQAKREQVLGSLRKGGVRFLVATDVAARGIDIPDLSHV
ILYEPPEDRESYIHRAGRTGRAGSAGTVISLVDIIQKLELQRIAKHYKIDIQHRPTPDDE
SVARIAGDRLTALLEARLRARTGLERERQQRFAPLARALAGDDEQLALLAMLLDQYYQES
LHAAPPMPATAPAPRQDRRREERRDDRRDERRDERRDDRRDEREGREARRRDRDRRDERR
DERRDERKDERREERAPAAAATDAPSGSDSPEQHAEQREDDQAPREGRRRSRRGRGRKRR
RDAEARAAQEAGQAADATQDHADDMTDDADDAWDGGMTAAPEAPEAPKTLSEAPRQRREA
RPAKTDAPAASAASTEDEAEDAPAGKPAKAKPARPARGKAAKAAQATESAPDSADSDAPD
APSSTEETAEAKPARGARRGRGKAEAASPEKGKAASAGKAASGGKPRAKAPERDEDEDDG
MPLLLEDYLSEDDDRLDDVRGSAPSVGSVFGQRLPTGAKAQAQPAQSARPSQSSRSGGKA
AAKPKEAPKAAPAPVQPMLTQALEGSGAFDDEFDEDFDDQPGGNDASDAATGNAATPAKR
RRRRRRKKPAGAAPEGADAGTAHHAEADAE
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgacccacgatccacgccttgagggcgacgcgcactcggctgccgacaccgacgaaacc
ccttcgtccgcgcctgccgctgccgatgtgcccgcccccgccgtcgctgacacccccggc
accaccgccgccgacacacccggcaccccgccccccgtggccgcttccgacgccccagac
gaaggcaccccccccgaaatttccgatcccgcgcccgcaattcccgcagacaccgccgct
ctcgcagcccttgcggacgatgaagacccggccctgcgccttgccgccgagatcacccgc
atcgacgagcccgaagacgcgctgcccccggtgaccctggccaacctgccccccatgatg
caggaggccgccgcccgcgccgggtggaccaacctgatgccggtgcagacccacgccctg
ccgtacatcttcgccaagcgcgacctgatggtgcagtcgcgtacaggcagcggcaagacc
ggggccttcctgctcccgctgctcgaacgcctgtcccccgacgaacccgccgtgcaggcc
ctgatcctggtgcccacgcgcgaactggccttgcaggtggaatacgaggcccgtgtgctg
ttcgaaggcaccggcctgaacgtggccgccgtgtacggcggcgtgggctacggcaagcag
atggacgccctgcgcgacggcgcgcacctggtggtgggcacgccgggccgcgtgctggac
cacctgctgcgccgcaccatgaacctggaccgcatccgggcgctggtgttcgacgaagcc
gaccgcatgctgtccatcgggttctacccggacatgaaggaaatccagcgttacctgccc
aagcgccgtatttccgcgtacctgttctccgccacctacccgccccacgtgctgaacctg
gcgggcgagttcctgagcgaaccgcgcatgctcagcctgagccaccagcaggtgcacgtg
gcccagacgcagcacctgtattgcgaaaccaagcccatggacaaggaccgggcgctggtg
cgcatcatcgagtccgaaaaccccacggcggccatcatcttctgcaacaccaaggccaac
gtgcactacgtgacggcggtgctgcagggcttcggctacaatgccgacgaactttcggcc
gacctgacccaggccaagcgcgaacaggtgctgggcagcctgcgcaagggcggggtgcgc
tttctggtggccaccgacgtggccgcgcgcggcatcgacattcccgacctttcgcacgtc
atcctgtacgagccgccggaagaccgcgaatcgtacattcaccgcgccgggcgcaccggt
cgcgcgggttcggcgggcacggtcatctcgcttgtggacatcatccagaagctggaactg
cagcgcatcgccaaacactacaagatcgacatccagcatcggcccacccccgacgacgag
tcggtggcgcgcattgccggtgaccggctgaccgccctgctggaagcgcgcctgcgcgcc
cgcaccgggctggaacgcgaacggcagcagcgcttcgcgccgctggcccgcgccctggcc
ggggacgacgagcagcttgcgctgctggccatgctgctggaccagtactaccaggaaagc
ctgcatgcggccccgcccatgcccgccaccgccccggccccccgacaggaccgccgccgc
gaagaacgccgcgatgaccgcagggatgaacggcgcgatgagcgccgtgatgacaggcgg
gatgaacgcgaagggcgcgaagcacgccgtcgcgaccgtgaccgacgtgacgagcgacgc
gatgaacgccgggacgaacgcaaggacgaacggcgcgaagaacgcgcacccgccgcagcc
gcaacggacgccccctccggttccgacagcccggaacagcacgcggaacagcgtgaggac
gaccaggccccccgcgaagggcgccgccggtcgcgccggggccgtggccgcaagcgccgc
cgcgacgccgaggcccgcgccgcgcaggaagccggacaggccgccgacgccactcaggat
cacgcggacgacatgacggacgacgcggacgatgcatgggatggcggcatgaccgccgca
cccgaagcgcccgaagcccccaagacgttgtccgaagcgcccagacagcgcagggaagcc
cgccccgccaaaaccgatgcacccgctgcatccgctgcatccactgaggacgaggcggaa
gacgctccggcaggcaagcccgccaaggccaagcccgcgcgccctgcccgtggcaaggcc
gccaaggctgcccaggcgaccgagtccgctcccgacagtgcggattccgacgctcccgac
gcccccagttccacggaagagaccgctgaggccaagcccgcgcgcggtgcacgccgtggc
aggggcaaggccgaagccgccagccccgaaaagggcaaggccgcgtccgcgggcaaggca
gcatccggcggcaagccccgggccaaggcccccgaacgggacgaggacgaagacgacggc
atgcccctgctgctggaagactacctgagcgaagacgacgaccgtctggatgacgtgcgc
ggctccgctccgtcggtgggcagcgtgttcggccagcggttgcccaccggggccaaggct
caggcccagcccgcccaatccgcccgaccctcgcagtcctcgcgatccggaggcaaggcc
gccgcgaagcccaaggaggcccccaaggccgccccggcaccggtacagccaatgctgacc
caggccctggaaggctccggcgcgttcgacgacgagttcgacgaggacttcgacgaccaa
cccggcggaaacgacgccagtgacgccgccaccggcaacgcggccacgcccgccaaacgc
cgcaggcgccgccgccgcaagaagcccgccggggccgcgcccgaaggcgcggacgccggt
acggcacaccacgcggaggccgacgccgaatga
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