Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_2898
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Entry
DvMF_2898 CDS
T00816
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvm03016
]
DvMF_2898
Enzymes [BR:
dvm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DvMF_2898
Transfer RNA biogenesis [BR:
dvm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DvMF_2898
Prokaryotic type
tRNA splicing ligases
DvMF_2898
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACL09835
UniProt:
B8DS80
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All DBs
Position
complement(3658581..3660065)
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AA seq
494 aa
AA seq
DB search
MGRTTHKKHTGKRGSQPSADDSRRKRGQGRTSGAAPADRMAYATCTGVRNAPPRLSLTIP
PDRLDAATWEQIESALALPCMVHLAVMPDAHAGYDLCIGGVALLDGHISPSFVGYDIGCG
MCHVNTGLPVDEVLPDEAARQLLLDRLRLTIPVGTATRAPGEYDLPRFISGSGDTQLTDA
VNARQSIQLATLGGGNHFLEVGVNKRGEIGVTVHSGSRRSGWDIGAWYMKQGRLFPLVSR
LGRAYRQDMDWALDYALLNRRLMLEHALRALADVHRQLARPTGKRPARPPKPTGDAGATG
LNGPSHAPTSPAPAASTDFPPPVVSISPLSGQSLAATPIPSAQPPLSEQEISLLLGRMVN
ENHNHAVVLNRLGPSGAPLVLHRKGATPADAGQPGIIPANQRDGVYVTVGLGNEEYLSSA
SHGAGRRMSRNEAQRTIPLERFRSQMRGIACRTDKGVLDEAPDAYKPIAEVLAAQDGVLV
RIIDHFRPLVVLKG
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcaccacacacaagaagcacaccggcaaacggggctcgcaaccgtccgccgac
gactcccgccggaaacgcggccaggggcgcacatccggcgcggccccggctgaccgcatg
gcctacgccacctgcaccggggtgcgcaacgcgccgccgcgcctgtccctgaccattccg
ccggaccggctcgacgccgccacatgggagcagatcgaaagcgccctggccctgccctgc
atggtgcacctggccgtcatgcccgacgcccacgcgggctacgacctgtgcatcggcggg
gtggccctgctggacgggcacatcagtcccagcttcgtgggctacgacatcggctgcggc
atgtgccacgtgaacaccggcctgcccgtggacgaggtgctgcccgacgaggccgcgcgg
caactgctgctcgaccggctgcggctgaccattcccgtgggcaccgccacccgcgccccc
ggcgaatacgacctgccgcgcttcatcagcggcagcggcgacacgcaactgaccgacgcg
gtcaacgcgcgccagtccatccaacttgctaccctgggcgggggcaaccacttcctcgaa
gtgggggtgaacaagcggggcgaaatcggtgttaccgttcattccggctcgcgccgctcc
ggctgggacatcggggcctggtacatgaagcagggcaggctgttcccgctggtttcgcgc
cttggccgcgcctaccggcaggacatggactgggcgctggactatgcgctactgaaccgc
cgcctgatgctggaacacgccctgcgcgcactggccgacgtgcatcggcaactggcccgg
cccacaggcaaacgccccgcccgcccccccaagcccactggggatgccggagccacaggc
ctcaacggcccatcccatgccccgacttccccggcccctgccgcctcgacagacttcccc
ccccctgtcgtctccatctctcccctatctgggcagagcctcgcagccaccccgattccc
tctgcccagcccccgctttccgaacaggaaatttccctgctgctgggccgcatggtcaac
gagaaccacaaccacgccgtggtcctgaaccggctcgggccatccggagcgccgctggtg
ctgcaccgcaagggcgcaacaccggcggatgcgggacagcccggcatcattcccgcaaat
cagcgggacggggtgtacgtcacggtagggctgggcaacgaggaatacctgtcctcggcc
tcgcacggagcggggcgccgcatgtcccgcaacgaggcgcaacgcaccataccacttgaa
agattccggtcgcagatgcgcggcattgcctgccgtaccgacaagggcgtgctggacgag
gccccggacgcctacaaacccatcgcggaagtgctggccgcgcaggacggcgtgctggtg
cggatcatcgaccacttccgcccgctggtggtgctgaaagggtga
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