Nitratidesulfovibrio vulgaris Miyazaki F: DvMF_2926
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Entry
DvMF_2926 CDS
T00816
Name
(GenBank) beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dvm
Nitratidesulfovibrio vulgaris Miyazaki F
Pathway
dvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DvMF_2926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvm03019
]
DvMF_2926
Messenger RNA biogenesis [BR:
dvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DvMF_2926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ACL09863
UniProt:
B8DSA8
LinkDB
All DBs
Position
complement(3696045..3697706)
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AA seq
553 aa
AA seq
DB search
MADQTPHLTITPLGGLGEIGLNCQIWSTPDSMVLVDCGLMFPEDYHLGVDVVIPRFDHVL
QNRHRVRGIVLTHAHEDHIGALPWLMPHLKAPIYGSRFTLALVEHKLREHGLADRVELVP
VSPDAPLVLGDMTFRFLPVCHSIIEGYALAVETPAGRVVHTGDFKIDPNPLSGPGTDLAL
FRDFAGDEGVRLLLSDSTNIERDGQSLGEREIMDTFRQLFDEAEGRIVVTLFSSHIQRIQ
EVFDLASEFGRKVVVSGRSLMNNIEIARNLGFLRAEAGMILDAVTMPPMADRDLVLLVTG
SQGEPLSALSRIIMGEHKQLCIHRGDTVVMSSRFIPGNARAITKLINELYRLGAEVYYDK
VRSIHASGHAHRDELRAMIEAVRPRYFVPVHGEYRHLVKHCRLAQECGVAQERTIILENG
DPITLTPDSVRFEEHVPVEFILVDGKGVGDVGHSVLKERHILGGEGMVIVVLVVDDTGWE
VLHGPEMLSKGFVFEQHYNHVLEDAKCIVLDIFENIPPGETERLQDRIRSSLRRFFRKVL
ERDPIVVPVITTI
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccagaccccgcacctgaccatcaccccccttggcggactcggagagatcggc
ctgaactgccagatctggtccacgccagactccatggtcctggtggactgcggtctgatg
ttccccgaagactatcaccttggcgtggacgtggtgattccgcgcttcgatcatgtgctg
cagaaccgccaccgggtgcgcggcatcgtgctgacccacgcgcacgaggatcacatcggc
gcgctgccctggctgatgccccacctgaaggcccccatctacgggtcgcgtttcaccctg
gcactggtggaacacaagctgcgcgaacacggcctggccgaccgcgtggaactggtgccc
gtctcgcccgatgcgccgctggtgctcggcgacatgaccttccgctttctgcccgtgtgc
cattccatcatcgaaggctacgccctggccgtggaaaccccggcgggccgcgtggtgcac
accggcgacttcaagatcgaccccaatcccctgtccggccccggcaccgaccttgcgctg
ttccgcgactttgccggggacgagggcgtgcgcctgctgctgtccgactccaccaacatc
gagcgtgacggtcagtctctgggcgaacgcgagatcatggacaccttccgccagttgttc
gacgaggcggaaggccgcatcgtggtcacgctgttttccagccacatccagcgcatccag
gaagtgttcgacctggccagcgaattcgggcgcaaggtggtggtcagcggccgcagcctg
atgaacaacatagaaatagcgcgtaacctcggctttctgcgggcagaggcgggcatgatc
ctggacgccgtgaccatgccccccatggccgaccgcgacctggtgctgctggtcaccggt
tcgcagggcgagccgttgtccgccctttcgcgaatcatcatgggcgagcacaagcaactg
tgcatccaccggggcgacacggtggtcatgtcctcgcgcttcatccccggcaacgcgcgg
gccatcaccaagctgatcaacgaactgtaccggctgggcgcggaagtatactacgacaag
gtgcgttccatccacgcatcgggccacgcccaccgcgacgagctgcgcgccatgatcgag
gcggtgcgcccccgctacttcgtgccggtgcacggcgaataccgccacctggtcaagcac
tgccgcctggcgcaggaatgcggcgtggcgcaggaacgcaccatcatccttgaaaacggc
gaccccatcaccctcaccccggacagcgtgcgcttcgaagagcacgtgccggtggaattc
atcctggtggacggcaagggcgtgggcgacgttgggcattcggtgctgaaggaacggcac
atcctgggcggcgaaggcatggtcatcgtggtgctggtggtggacgacaccggctgggaa
gtgctgcacggcccggaaatgctgtccaagggcttcgtgttcgagcagcactacaaccac
gtgctggaagacgccaagtgcatcgtgctggacatcttcgagaacatcccccccggcgag
acggaacggctgcaggaccgcatccgctcgtcgctgcggcggttcttccgcaaggtgctg
gagcgcgaccccatcgtggtgcccgtgatcaccaccatctga
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