Desulfosarcina variabilis: Dvar_03940
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Entry
Dvar_03940 CDS
T10869
Name
(GenBank) RhlE: ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvar_03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvr03019
]
Dvar_03940
Enzymes [BR:
dvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dvar_03940
Messenger RNA biogenesis [BR:
dvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dvar_03940
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_30
Flavi_DEAD
Shikimate_DH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XPS82376
LinkDB
All DBs
Position
complement(426856..428052)
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AA seq
398 aa
AA seq
DB search
MNFGNFNFHPLVAKGIATAGYEKPTPIQVGVIPHVVKGCDVMGLAQTGTGKTAAFVLPIL
QRLAAGNQGHIRSLIIAPTRELAEQIHQSIEILGRPSGVRCVAIYGGVGIHQQIQKLKRA
DIVVACPGRLLDHIRRHNIDLTQLEILVLDEADHMLDMGFIPDVKQILKHLPVNRQTLVF
SATMPHEIRQLTKTFLNDPVTIKIGNTATADTVSHAFYPVAHHLKTALLLNLLENTNAES
VLVFTRTKHRAKSLGKKLMTAGYQAASLQGNLSQSRRQASLDGFRDGKYKILVATDIAAR
GIDVTRISHVINYDIPSTPDTYIHRIGRTGRATRSGEAYTFITGEDTKMVSAISRAVGSN
IEQRTLPTFNYGKTPHNFAYYSRQNKKPRQNKSAEKNR
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
ttgaactttggaaattttaactttcaccccttggtggccaaagggattgccacagcaggt
tatgaaaaaccaaccccaatccaggtaggcgttattccacatgtagtaaaaggttgcgat
gtgatggggctggctcaaacaggtacgggcaagacggcagcgtttgttctgccgatactt
cagcgattagcagcgggtaatcaaggacacattcgatcccttataatcgcaccgactcgc
gaattggctgagcagatacatcaatcaattgaaatccttggacgtccgtcaggcgtcaga
tgcgttgctatttacggtggtgtgggaatccatcagcagattcagaaattgaagcgggcc
gatatcgttgttgcctgtcccggccgtcttcttgaccatattcgtcgccataatatcgac
cttacccagcttgaaatattggttttggatgaagccgatcatatgctggatatgggattt
attccggatgtcaaacagattctcaaacatcttccggtgaatcggcagacactggtcttc
tcagcaaccatgccacatgaaattcgacaattgaccaaaacgtttcttaatgatcccgtc
actattaaaattggcaacactgctactgccgatacagtcagccatgcattttatccggta
gcccatcatttaaaaacggcgttgctgttaaatctcttggagaatacgaatgctgagtcg
gttctggtttttacacgcactaaacatcgcgctaagagcctgggtaaaaaactgatgaca
gcaggttatcaagcagcatcactgcaaggaaatctttcacagtcgcgcagacaggcttct
cttgatggattccgcgacgggaaatataagattttggtagctaccgatatcgcagctcgc
ggtattgatgttactcgtatttcgcatgttattaactatgacattccctccacaccggac
acatatattcaccggataggacgaacaggccgcgcaactcgcagtggtgaagcgtataca
tttattactggtgaagatacaaaaatggtcagcgcgatcagtcgagcggttggttcaaac
attgagcagcggacattacccacgtttaattacggtaaaacaccgcacaattttgcttat
tattcgcgacaaaataaaaaaccgcgtcaaaacaagtcagcagaaaaaaatcgttaa
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