Desulfosarcina variabilis: Dvar_06140
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Entry
Dvar_06140 CDS
T10869
Name
(GenBank) Pnp: polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvar_06140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvr03019
]
Dvar_06140
03016 Transfer RNA biogenesis [BR:
dvr03016
]
Dvar_06140
Enzymes [BR:
dvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Dvar_06140
Messenger RNA biogenesis [BR:
dvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dvar_06140
Transfer RNA biogenesis [BR:
dvr03016
]
Prokaryotic type
tRNA degradation factors
Dvar_06140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_RRP5
KH_SLS1_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
XPS82596
LinkDB
All DBs
Position
672289..674388
Genome browser
AA seq
699 aa
AA seq
DB search
MEYTFKADVGGNTFSIQAGKVAKQASGSVVVQYGDTIVLVTVVSANDERDTDFLPLSVEY
QEKVYAAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFPKAYRFETQVIATVLSMDQ
ENDPDVLAMVGASAALEISDIPFAGPIAAVRVARIDGQFIANPTLAQIADSDINIIIAGS
RTGVVMVEGGADVASEADMLEAIFFGHQAIQPLIDIQEQLKSALGKTKRDFVPPEKDPAL
VEMITQQATAPLREALGVPEKMKRYAAVRAAKSQIIEALDESMADRREEVVAILGDLQKQ
ICRDMILKEGRRIDNRRFDEIRPITCEVGVLPRPHGSALFTRGETQVLGILTLGSGGDEQ
RVETLSGEENRPFMLHYNFPPYSVGEVKRVGSPSRRDIGHGGLSTRALERVLPDKENFDY
TIRIVSEVLESNGSSSMGTVCSGTLAMMDGGVPIKAPVSGIAMGLVKEGDQVVILSDILG
DEDHTGDMDFKVTGTTEGITALQMDIKIHELSRDIMEKALDQAKVGRMHILDKMLEALST
PREDISPFAPKIVSIKINPDKIRDVIGPGGKVIRAIQSETNTKIEIDDSGLVKIAATSAE
DGEAARLQIESLTLEPEVGVTYEGKVVKTTDFGAFVQIVPGTDGLVHISQLADRRVGKVT
DVVKEGDMLKVKVLEVSKDGKIRLSHKAVLEDERKANGK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaatatacatttaaggcggatgtgggaggcaatacctttagcatccaggcaggaaaa
gtcgccaaacaggcctccggatcggtggtcgttcagtacggcgatacgatcgtcctggta
acggtggtttccgcaaatgacgagcgggatacggattttctgccgctttctgtggaatat
caggaaaaagtctatgctgccggccgcattccgggcaactattttcgccgtgaaatcgga
aggcccagcgaaaaagaaaccctcaccgcccgcctgattgaccggcccatccggccgcta
tttcccaaggcctatcgctttgaaacccaggtcatcgccacggtcctgtccatggaccag
gaaaatgatccggatgtgctggccatggtcggggcgtcggcggcgctggagatttcagac
attccttttgccggtccgatcgccgccgttcgtgtggcccgcattgatggacagttcatt
gccaaccccacccttgctcagattgccgacagtgatatcaatatcatcattgccggttcg
cgtaccggtgtggtcatggtggaaggcggtgccgatgtggccagcgaggcggacatgctg
gaggccattttctttggtcaccaggccattcagccattgatcgatattcaggaacagttg
aagtccgccctggggaaaaccaaacgcgattttgttccgcctgaaaaagacccggcgttg
gttgaaatgattacgcagcaggccactgcccccttgcgcgaagcgctgggcgtacccgaa
aaaatgaaacggtatgcagccgtacgggcggccaaatcccagatcatcgaggcattggat
gaatcgatggccgatcgacgggaagaggttgttgcgatccttggcgatctgcaaaagcag
atttgccgcgatatgattctcaaagagggacggcgtattgacaaccgccggttcgatgaa
atccgccccatcacctgtgaggtgggggtgctgccccggccccacgggagcgctctgttt
acccgtggtgagacccaggtgctcggtattttgactttggggtccggtggcgacgagcaa
cgggtggaaacgctcagcggggaggagaaccggccctttatgctgcattacaattttccc
ccttattccgtgggtgaggtcaaacgtgtggggtcacccagccggcgcgatatcggccat
ggcggattgtccacgcgggccctggaacgtgtgttgccggataaggaaaattttgattat
acgatccgaatcgtctcggaagtactggaatccaacggctcttcgtccatgggaacggtc
tgttcggggacattggccatgatggacggcggcgtgccgatcaaggccccggtgtcgggg
atcgccatgggattggtcaaagaaggcgatcaggtggttattctgtccgatatcctgggc
gatgaagaccacaccggcgatatggactttaaagtcaccggtaccaccgaaggtatcacg
gcgctgcaaatggatatcaaaatccatgaactttcccgagacattatggaaaaggcgttg
gaccaggccaaggtcgggcggatgcacatcctggataaaatgctggaagccctttccaca
ccgcgggaggacatttcgccgtttgcgcccaaaattgtttcgattaagatcaaccctgac
aagatccgcgatgtcattggtccagggggaaaggtgatccgggccattcaaagcgaaacc
aatactaaaatagaaatcgatgatagcgggcttgtgaaaattgccgccacatccgccgag
gacggcgaggcagcgcgactgcagattgaatccttgaccctggagcccgaagtgggcgtc
acctacgaggggaaagtggtaaaaaccacagatttcggggcgtttgttcagatcgtgccc
gggaccgatgggctggttcatattagccagctggctgatcggcgcgtgggcaaggtcacc
gatgtggtcaaggaaggggatatgctcaaggtcaaggtcctggaggtttccaaggacggc
aaaatccgtctcagtcataaggccgttctggaagatgagcgtaaagccaacggtaaataa
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