Desulfosarcina variabilis: Dvar_18490
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Entry
Dvar_18490 CDS
T10869
Name
(GenBank) LysM: peptidoglycan-binding lytic transglycosylase
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
dvr Desulfosarcina variabilis
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
dvr01011
]
Dvar_18490
Enzymes [BR:
dvr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Dvar_18490
Peptidoglycan biosynthesis and degradation proteins [BR:
dvr01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Dvar_18490
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SLT
LysM
LysM3_LYK4_5
Motif
Other DBs
NCBI-ProteinID:
XPS83831
LinkDB
All DBs
Position
2085721..2087796
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AA seq
691 aa
AA seq
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MADKRFLACIAVVCTLFLGLSASGYADQTLFPEYTEVKPNVSFWINIYTRYPTTQVVIHD
SVDLDIVYDVIDLVPAKAPGARKANRKRMKAASKKYWQILRDLASDPSPQDPDSQRVAAL
FGDSADAAVFRQASHQVRCQLGQADRFRDGLVRSGEYIDQIRSILTSYGVPEALAYLPHV
ESSFDTSAYSKFGAAGMWQFTRSTGKRFLTVNLVVDERRDPIAATHAAAQLLKENYEKLG
SWPLAITAYNHGAAGMQRAKAMHGDYPNIFSEYNGRTFKFASRNFYSEFLAARKIASDHQ
RYFGELDLDDPVSRHSIRLEGFLDYKALCRHLGFDPAIIRAMNPALRPPVFNGQKLIPKD
YRLNLPDMAEFDGGVSLATLLPDIYQRAQKPSRFYTVQRGDTAGKIARMHHVRVEDLVLA
NNLNHRATVYLRQRLRIPRTGVAVAKKTTESTTGNVPVEVSLAVADALPNAEPTLATPSM
ENRAAGDRHPGSASAVLLAKANVTDVQDQRPLTVEARVGRDAKPAVVDVDFAFTRVEQTQ
RQPLGVINVDVEETIGHYAEWAGVRTSRIRHLNNIPYGKPLRLHQAIQIPLDNVTATVFE
ARRLSFHENLQKEFFAAHRVEELQQYRVKPGDSYWTLCRDKFDLPLWLLRHYNKDINLLA
LRANQPLIIPAIQRIPSESSISFEQTASPDV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagcgtttccttgcctgtatcgccgttgtttgcactttatttttgggactg
tccgcatctgggtatgccgatcaaacgctgtttcccgaatatacggaggttaaacccaat
gtatctttctggataaatatctacacccgctatcccaccacccaggtggtgattcatgac
agtgtggatctggatattgtctacgatgtgattgatcttgtgccggctaaggcgccgggc
gcccgaaaagcaaatcgaaaacgtatgaaagcggccagtaaaaaatactggcagattctg
cgcgatctggcatcggatccatcaccccaagatcccgattcccagcgcgtggcggctttg
tttggtgacagtgcagatgccgcggtgtttcggcaagccagtcatcaagtgcgttgtcaa
cttgggcaggcagatcgtttcagggatggtctggttcggtccggggaatatatcgatcag
attcgcagcattttgacttcctatggcgtgcctgaagcgctggcttaccttcctcatgta
gaatcctcatttgatacaagtgcttatagtaaatttggtgctgcgggaatgtggcagttt
acccggtccacgggcaaacgctttttaaccgtcaacctggttgtggacgagcggcgggat
cccatcgctgccacccatgcggccgcgcaactgctcaaggaaaattatgaaaagctgggg
agttggcccctggccatcaccgcgtataatcatggtgccgccggtatgcaacgggccaag
gcgatgcatggtgattaccccaacattttcagtgaatacaatgggcgcaccttcaagttt
gcctcgcgtaatttctattcggaatttctggccgcccgtaaaatcgcctcggatcaccag
cgttattttggtgaattggacctggatgaccctgtatcccgccattcaatccgtctggaa
ggatttttggattataaagcgctttgtcgccatctcggttttgatccggcgatcatacgc
gcgatgaaccctgctttgcgaccaccggtgttcaatggccagaaattgattcccaaagat
taccggcttaacctgccggacatggctgaatttgacggtggagtcagccttgccactctt
ttgccggatatttaccagcgcgcacaaaagccgagtcgtttctacacggttcagcgtggt
gacaccgccggcaaaattgcccgcatgcaccatgtccgtgttgaagacctggtcctggcc
aacaacctgaatcaccgggccaccgtttatttgcggcagcggctgcggattccccggacc
ggggtggcggttgccaaaaaaacaaccgaatcaacaactggaaacgtgccagtagaggtt
tcacttgcggttgcagatgcgttgccaaacgcagaaccgacgcttgcaacgccttccatg
gaaaatcgtgctgccggcgaccggcacccggggtcagcgtcagccgtcctgcttgccaag
gcgaacgttacggacgttcaagatcagcgcccgctgacggttgaggccagagtcggccgt
gacgccaaacccgcggttgtcgacgtcgatttcgcttttacacgtgttgagcaaacgcag
cggcaaccgttaggggtcatcaatgtggacgttgaagaaaccatcggtcattatgccgag
tgggcaggggtacgcacctcgcggattcgtcatctgaacaacattccctacggcaaaccg
ctgcggctgcatcaagccatccaaatccccctggacaatgtgacggcaacggtttttgaa
gcgcgtcgcctgtcgtttcatgaaaatctgcaaaaggaattcttcgcggcccaccgtgtg
gaggaattgcagcaatatcgcgtcaagcccggcgatagttattggactttatgccgcgat
aaatttgatctgcccctatggctgttacgccactacaataaggatatcaacctgttggcc
ttgcgggccaaccagcccctgatcattcctgcgatccaacgcatcccgtccgagtcgtcg
attagctttgagcaaaccgcctcaccggatgtttga
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