Desulfosarcina variabilis: Dvar_18540
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Entry
Dvar_18540 CDS
T10869
Name
(GenBank) Rho: transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvar_18540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvr03021
]
Dvar_18540
03019 Messenger RNA biogenesis [BR:
dvr03019
]
Dvar_18540
Transcription machinery [BR:
dvr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Dvar_18540
Messenger RNA biogenesis [BR:
dvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dvar_18540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
S1CSD-TOTE-2
Spore_III_AA
AAA
AAA_24
AAA_25
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
XPS83836
LinkDB
All DBs
Position
complement(2091830..2092912)
Genome browser
AA seq
360 aa
AA seq
DB search
MKPVSGHLEILDKGFGFLRNIDNNYQAGSIDTFVPAFIISKFGLREGAFVEGRGEPGNPG
NQNLKLAAVDQINGVSLQQYAQTETMHAMTSINPNQRLRMSQGPKDLTGRALDLIVPMGR
GQRGLIISPPKSGKTTLLRHMANSVTINDPEMDVFVLLVNERPEEVTDFKRGLKDAHVLY
SSSDQSIGQHMRMTRLAVHTAMRCAETGRDTVVFIDSLTRMARAFNAETESYGRTLSGGL
GANAMEIPRKIFGAARNIEYGGSLTIIATILVNTGSRMDDIIYQEFKGTGNMDLVLNREC
AEHRIFPAIDIRQSGTRKEELLLDKDELKTVVEIRRTLSQKDTTDAMADLLEYLDRRRRN
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaccggtaagcggacacctcgagatactggacaagggttttggttttctgcgaaac
atcgacaataattatcaagccggctccatcgacacatttgtcccggcgttcatcatttcc
aaattcgggttacgggaaggcgcgtttgtggaaggccgcggagaaccgggcaatccgggc
aaccagaacctgaagctggcggccgtggaccagatcaatggtgtcagtttgcagcaatac
gcccaaacagaaaccatgcatgccatgaccagcatcaacccgaatcagcgcctgcgcatg
agtcaagggccaaaagatctgacgggtcgggcactggacctgatcgtacccatgggccgt
gggcagcggggattgattatctcaccaccaaaatcaggcaagacgacgttgctgcgtcat
atggccaactcagtaaccatcaatgacccggaaatggacgttttcgtcctgctggtcaat
gagcgccctgaagaggtgaccgacttcaaacgcgggttgaaagacgcccatgtactctat
tcttcgtcggatcaaagtattggccagcatatgcgcatgacccgcctggccgtgcatacc
gccatgcgatgtgccgaaaccggtcgggataccgttgtttttatcgactccctgacccgt
atggcgcgggcgttcaatgctgaaacagaaagctacggccgtaccctatcaggtggtctc
ggggccaatgccatggaaattccgcgaaaaattttcggtgcggcacggaatatcgagtat
ggcggttcattgaccattatcgccacgatcctggtcaacaccggcagtcgcatggacgat
atcatctatcaggagttcaagggaaccggcaatatggatctggttctcaaccgcgaatgt
gccgagcaccgaattttcccagccattgacatccgtcagagcggtacccgcaaggaggaa
ttgctgctggacaaggatgaactcaaaacagtggtggaaatccgccgtaccctgtcacaa
aaagatacgaccgacgccatggccgatctgttggaatatttggatcgcagacgtcgaaac
taa
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