Desulfosarcina variabilis: Dvar_19490
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Entry
Dvar_19490 CDS
T10869
Name
(GenBank) RpoB: DNA-directed RNA polymerase, subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dvar_19490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvr03021
]
Dvar_19490
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_19490
Enzymes [BR:
dvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dvar_19490
Transcription machinery [BR:
dvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dvar_19490
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dvar_19490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_C31
Motif
Other DBs
NCBI-ProteinID:
XPS83931
LinkDB
All DBs
Position
2196461..2200546
Genome browser
AA seq
1361 aa
AA seq
DB search
MSKRPTANKRIRKSFGKIKKIVEIPDLIGMQRDSYQRFLQMNIAPEKREDIGLQAVFKSV
FPIKDFTGSASLEFVSYRFAEIKHSEEECVHRGMTYELPVRITVRLVVYDTDKDTGVSNI
RDIKEQEIYFGTIPLMTEKGTFIINGTERVVVSQLHRSSGVFFDHDKGKSHSSGKIIYSS
RIIPVRGSWIDLEIDPKDIVYIRIDRRRKFPVTVLFKAFGYTIEDLLSYFYKTVKISLEN
NAYHREFAPDLLKGTRATKDVIDPESGDVLVKKGRMFTQRALRQMTSGNFTHVPIEREDI
LEKAIAFSITDPETGEVLAGANDEIDETLLKKLEDAGINEFEILFIDGASSSDSIRKTLL
LDKVANKEEALIEIYRLLRPGNPATPEVAQDFLDHLFFKSAYYDLSGVGRLKINLRLGID
TPVNVRTLRKEDILLTAKTLVELRDTQGVVDDIDHLGNRRVRAVGELLENQYRIGLVRME
RAIKERMSLQEVDALMPHDLVNPKPVSAVVKEFFGTSQLSQFMDKTNPLSETTHKRRLSA
LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLSTYAKVNDFGFIETPYR
VVENAHVSKDVKFLSAFEEKDHPIAQANAPLDEGNTYINPTVTSRVAGEFMMVDREQIEL
MDISPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIKAEAPLVGTGIEGVVAKDS
GVTIVAKRDGQVVDVDASRIVLKHDSSDESTDRPVTIYNLLKFVRSNQNTCFNQRPIVKK
GQFVEAGEIIADGPATEQGELALGKNVTVAFMPWGGYNFEDSILVSERLVRDGVYTSVHI
EEFEVVARDTKLGKEEVTRDIPNVGEEALRNLDDSGIIRLGAEVKQGDILVGKITPKGET
QLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGIVIDAKIFSRRGVEKDERTHSIEAAEM
AAMEKNKNDEIKIIGHSVRSQLERLLDGQQCSAPLKKGKTIYLAKNTVIQPGSLADIPIA
DLEGLLFDDPASTETVHQVLDIYHEQVDRCQEEFEHRLGRFEKGDELPPGVIKMVKVYVA
MKRKLSVGDKMAGRHGNKGVVSRILPIEDMPYFADGRPVDMVLNPLGVPSRMNVGQILEI
HLGRAAKGLGDQLNALLEENNVQMLRQKLSNIFGEAIEDPSSLDDNETTEFASFYKNGVH
MATPVFDGAKEEEIKRLLNEAEVSPTGQTTLYDGHTGEAFKEKITVGTMYMLKLHHLVDD
KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHALQEFLTVKSDDMAGR
TRMYEKIVKGQNVLEPGIPESFKVLTKELQSLGLDVTLLED
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagaccaacggcgaacaagagaattcgaaaaagctttggcaaaataaaaaaa
attgtagaaatccctgacctgataggtatgcagcgggattcataccagcgatttctgcaa
atgaatatcgctcccgaaaaaagggaggatatcggtttgcaggcggttttcaaatccgtg
tttccaatcaaggatttcacggggagtgcttctctggagtttgtgtcttatcgatttgct
gaaatcaagcatagtgaagaagaatgtgtccaccgtggcatgacttacgagctgccggtt
cgcattaccgtcagactggtggtttatgacacagataaggatacgggcgtatcaaacata
agagacatcaaggagcaggaaatttattttggcaccatcccgctgatgactgaaaaggga
acatttatcatcaacggtaccgagcgggtggttgtcagccaattgcatcgttcatcgggc
gtctttttcgaccatgataaaggcaagagccattcaagcggcaaaattatttacagctct
cggataatccccgttcggggatcatggatcgatttggaaattgatcccaaagatatcgtc
tacattcgaatcgatcgccgtcgaaagttccctgttacggtactattcaaagcatttgga
tacaccatagaggacctgctcagttatttctataaaacggtcaagattagccttgagaac
aacgcgtaccaccgggagtttgcgcctgacctgttaaaaggcacgcgggccacgaaagat
gtcattgacccggaaagtggcgatgtcttggtgaaaaaagggcgcatgtttacccaacgt
gccttgcggcagatgacgtccggcaattttacccatgtgcccattgaacgagaagatatc
ctcgaaaaggcgattgctttctccatcaccgatccagagaccggtgaagtgttggccggt
gccaatgacgagattgacgagaccctgctgaaaaaacttgaagatgccggcatcaatgaa
ttcgaaattttatttattgacggcgcatcaagcagtgattcgattcgaaagaccttgctt
cttgataaagtcgccaacaaggaagaagccctgatcgaaatctaccggctgcttcgcccg
gggaacccggccaccccggaagtggcccaggattttctggaccacctcttcttcaaatct
gcctactacgatctgtccggcgtcgggcggctcaagatcaacttgcgcttgggcattgat
acgccggttaatgtcagaaccctgcgcaaagaggacatcttgttgacggccaaaaccctg
gttgagcttcgcgatacccaaggggtggtggatgacattgatcatttgggcaacaggcgc
gtgcgtgcggttggtgaattgctggaaaaccagtaccgaatcggcctggttcgtatggag
cgggccatcaaggagcgcatgagcctgcaagaggtcgatgcactaatgccgcatgatctg
gtaaatcccaaaccggtatcggcggtggtcaaggaatttttcggtaccagccagctcagc
cagtttatggacaaaaccaatccactgtccgaaaccacccacaaacggcgtctgagtgca
ttgggacctggcggtttgacacgagaacgtgccggttttgaagttcgcgatgtccacccg
tctcactatggccgcatttgtcccattgaaacaccggaaggaccgaatatcggactgatt
gtttcgctttccacttatgctaaggtaaacgatttcggctttattgaaacgccgtatcgt
gtcgtggaaaatgctcacgtatccaaagatgttaaattcctgagcgcttttgaagagaaa
gatcatcccatcgcgcaggccaatgcgccccttgatgagggcaacacgtacatcaatcca
acggttacctcccgtgttgccggtgaattcatgatggtcgatcgggaacagatcgagctg
atggatatttcgcccaaccagttggtgagcgtctcggcatcgctgattccttttttggaa
aatgatgacgccaaccgggccttgatggggtccaacatgcagcgccaggcggttcccctg
atcaaagccgaggcgccgctggtgggaaccggaatcgaaggggtggtggccaaggactcc
ggggtcaccatcgttgccaaaagggacggtcaggttgtggatgtggatgcatcgcggatc
gtcttgaaacacgattcttcggacgagagtacggatcgaccggtgaccatttacaaccta
ttaaaattcgttcggtccaatcagaatacctgctttaaccagcgtccgattgtaaaaaaa
ggacaattcgtcgaggctggcgagattatcgccgacggaccggccaccgagcagggtgag
ctcgccctgggaaaaaacgtcaccgtggcgtttatgccctgggggggatacaactttgaa
gattccatcttggttagcgaacgcttggtgagagatggggtctatacatcggttcatatt
gaagagttcgaagtggtcgccagggatacgaaactgggcaaggaagaggtgacccgggat
atacccaatgtcggcgaagaagcgcttagaaatcttgatgacagcggaattattcgcttg
ggggccgaagtcaagcagggtgatatcctggtcggtaaaattacccccaaaggcgaaacc
caattgtcgccggaagaaaaattgcttcgtgcgattttcggtgaaaaagccggtgatgtg
aaagacacgtcactgcgtgtgccaccgggtgtcgaaggtattgttatcgatgccaagata
ttctccaggcgcggggtcgaaaaagatgaacggacccatagcatcgaggcggctgaaatg
gctgccatggagaaaaacaagaatgatgaaatcaaaattatcggccacagtgtgcggtcc
cagctggagcgactgctggatgggcagcaatgttcggcgccgctgaaaaaaggcaagacc
atctacttggccaagaataccgttatccaaccggggagtttggcggacattccgattgcc
gatcttgaggggctgctttttgatgatccagcatctaccgaaacggtccatcaggttctg
gacatttaccatgagcaggtggatcgctgtcaggaagagtttgaacatcgcctcggacgt
tttgagaaaggcgacgagttgccaccgggggtcatcaaaatggtcaaggtgtatgtggcc
atgaaacgcaaactttccgtgggcgacaagatggccggccggcacggcaacaagggggtt
gtctccaggattctaccgattgaggatatgccctattttgccgatggtcgtccggttgat
atggtgctgaatccgctcggtgttccgtcgcgtatgaatgtgggtcagattctggaaatt
cacctgggtcgggccgccaaggggttgggggatcaactcaatgccttgctggaagaaaac
aatgtccagatgctgcgccagaaactgagtaatattttcggggaggccattgaggacccg
agttcattggatgacaatgaaacaaccgaattcgcttccttctataaaaatggtgtgcac
atggccacaccggtctttgatggtgccaaagaagaggagataaaacggttgctgaacgaa
gccgaggtcagtccaacgggacagacaaccctttacgacggtcacacgggagaggccttt
aaggagaaaatcacggttggtacgatgtatatgcttaagcttcaccatttggtcgacgac
aaaattcacgcccggtccattggtccctattcgttggtgacccaacaaccacttggtggc
aaggcgcaattcggtggtcagcgattgggtgaaatggaagtttgggccatggaggcctat
ggtgccgcccatgcacttcaggagtttctgacggttaaatcagacgatatggccggtcgg
acgcggatgtatgagaaaatcgttaagggccagaacgttttggaacctggtattcctgaa
tcgttcaaagtacttaccaaagagctccagagtttggggctggatgtcaccctgctggaa
gactaa
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