Desulfosarcina variabilis: Dvar_19500
Help
Entry
Dvar_19500 CDS
T10869
Name
(GenBank) RpoC: DNA-directed RNA polymerase, subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dvar_19500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvr03021
]
Dvar_19500
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_19500
Enzymes [BR:
dvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dvar_19500
Transcription machinery [BR:
dvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dvar_19500
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dvar_19500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Rotamase
Rotamase_3
Peptidase_M23
Apocytochr_F_C
Rotamase_2
Motif
Other DBs
NCBI-ProteinID:
XPS83932
LinkDB
All DBs
Position
2200614..2205023
Genome browser
AA seq
1469 aa
AA seq
DB search
METLYDFFSKPTDPRRYTGVKVSLASSDQIRQWSHGEIKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGVICEKCGVEVIQSKVRRERMGHIELATPVSHIWFLKSL
PSKIGNLLDITLKNMEKVLYFDSYIVIDPKDTALTRGQLLSDDKYQEAIDTYGFGKFEAG
IGAEAVKAMLENIELDELYQELRKDIRATNSVAKRQKLSKRLKIVDAFMRSGLEPVWMIM
DVIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLMDLKAPEIIVRNEKRML
QESVDVLFDNGRHGRVITGTNKRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRTVITVGP
NLRLHQCGLPKKMALELFKPFVYYRLEQKGLVSTVKSAKKMVEREVPEVWDTLDEVVKEY
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSVESQIE
ARVLMLSSNNILSPANGSPIIVPSQDIVLGLYYMTRGKDGMRGEGKIFSKPEEVRAAYDG
RAIDLHANIVVRIGKERVETTVGRVLLWEIMPKDEVVRLRHIMVGDEKTMATVRAAAADG
DDFTELVETYSESLDKENDGEIGLLKKEEVLLLFESDADQAAQLFTLALNELSEVITTRS
GHHLFQVMERRPEIPFEVINKVMDKGALRGLVDYVYRNLGPKATVILADRLKDIGYKYST
KGGLSISIDAMIIPEKKSDILQRADSQVSEIGRQYTEGLITQGEKYNKVVDIWAKATDDV
ANEMMAAMKVEPLLNKDGMPRLDESGQPQMAESFNPIYMMADSGARGSKDQMRQLAGMRG
LMAKPSGEIIETPIQANFREGLSVLQYFISTHGARKGLADTALKTANSGYLTRRLADVAQ
DCAVVEDDCGVTQGVEVEPLLEGGEVIQRLSERILGRTTVKDILDPFTDEVIVRANKEIN
EKDALKIENAGVTNVLIRSVLTCRTKHGVCAKCYGRDLAHGRTVEMGQAVGILAAQSIGE
PGTQLTMRTFHIGGTASRRVEQADIRARTVGKIKFVDLNVVRNAENELIVMNRRGGEFAV
VGETGRERERCPVIYGAHIVVQEGQEVKPGDLLAVWDPFTTPIITEVDGSIKFGDLIPGK
TIQEKVDPVTGKSSRTVIESKTAEERPRISIKGEDGKTAKLPKGSGMARYMLPVDAIVMV
EEGDPVKAGDIIAKLPRATTKTKDITGGLPRVAELFEVRKPKEVAVLSEIDGYVSISKAT
KKGKQRVTISPVDVGDKKEYLIPRGKHINVYEGDYIRAGEPLIGGAANPQDILKIKGEVA
LAKYLVDEVQEVYRLQGVRINDKHIEVIVRQMMRRVKVVDIGDTDFILEEQVDKTTFEEA
NEAIIAKGGKPSIAEPLILGITKASLSTDSFISAASFQETTKVLTDASIAGSEDRLRGLK
ENVIMGRIIPAGTGVIEYRDLSVGASGRE
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atggaaacattatatgattttttctccaaaccaacagatccccgacggtataccggcgtc
aaggtgtccctggcgtcctctgaccagattcggcagtggtctcacggcgaaataaaaaag
ccggagaccatcaattaccggaccttcaaaccggaacgcgacgggttgttctgtgccaaa
atctttggccctaccaaggattatgagtgtaattgcggcaaatataaacgcatgaagcat
cgcggtgtcatctgcgagaagtgtggtgtcgaagtcattcagtccaaagtgcgacgggag
cgcatgggccatatcgagctggcgacgccggtttcgcatatctggtttctcaaaagtctg
cccagcaagatcggtaaccttctcgatattacgctgaagaacatggagaaggttctctat
ttcgattcatatattgtcattgatccaaaagacaccgcgctgacgcgtggccagctcttg
tccgacgacaagtatcaggaagccatcgatacctatggatttggaaaattcgaagcgggc
attggggccgaagcggttaaggccatgctggagaatatcgaactggatgagctttaccag
gaactgcgcaaggacattcgggcgaccaactccgtggccaaacgtcaaaaattatccaag
cggctgaaaattgtcgatgcctttatgcgttcggggctggagccggtttggatgatcatg
gatgttatccctgtgctgccgccggaccttcgaccgttggttccccttgaggggggacga
tttgccacctcggatctcaacgatctttaccgtcgggtgatcaatcgtaataaccggctt
aaacgactgatggatctgaaggcgccggagatcatcgtgcgcaatgaaaagcgtatgctt
caggagtccgttgacgttctgtttgacaacgggcggcacggccgggtgatcacgggaacc
aataaacgccccctcaaatcgcttagcgatacccttaaagggaaacaaggtcggttccgt
cagaacctgctgggcaaacgtgtggattattccggtcgtacggtcatcaccgtcggcccg
aacttaaggctgcaccaatgtggcctgcctaaaaaaatggctttggagttgttcaagccg
tttgtctactatcggctggaacaaaaagggctggtttccacggtaaaaagtgccaagaaa
atggtcgaacgcgaggtgccggaagtatgggatacgctggacgaggtggtaaaagagtat
ccggtcatgctcaaccgcgcaccgacattgcatcgactggggattcaagcgtttgaaccc
accttgatcgagggcaaggcgatccagttacatccactggtctgtaccgcctttaatgcc
gactttgacggcgaccagatggcggtgcatgtccccttgtccgttgagtcgcagatcgaa
gcgcgggtgctgatgctgtccagcaacaacatcctttccccggccaatggcagtccgatc
attgtgcccagccaggacatcgtgctggggttgtactatatgacccgcggtaaagacggt
atgcgcggcgaaggaaagattttctccaagcctgaagaagtgcgtgctgcttatgatggt
cgggcgatcgatctacatgccaacattgtggtgcgcatcggcaaagagcgggtggaaacc
acggtggggcgggtgttgttatgggagattatgcccaaggatgaagtggttcgcttgcga
catatcatggtgggggacgagaaaaccatggccacggttagagcggcggcggccgatggt
gacgattttacggagctggttgaaacctattcagaaagcctggataaagaaaatgacgga
gaaattggtctgctcaagaaggaagaggtcctgcttctgttcgaatccgacgctgaccag
gctgcccagttgttcacgcttgctttaaatgagctgtcagaggtgatcaccacgcggtcg
gggcatcacctctttcaagtgatggaaagacgaccggaaataccttttgaggtcatcaac
aaggtcatggataagggtgccctgcgtggattggtcgattacgtctatcgaaatttgggt
cccaaggccacggtcattctggccgaccggttaaaggacatcggctacaaatattccacc
aaaggagggctctccatctccattgatgccatgatcattccggaaaagaagagtgacatc
cttcagcgggccgacagtcaagtctcagaaattggccgtcaatatacggaaggtctgatt
actcagggggaaaaatacaacaaggtggtggacatttgggccaaggccacggatgatgtg
gccaatgaaatgatggcggccatgaaagtcgagccactgctcaacaaagatggaatgccg
cgtctggatgaatccggccaacctcagatggcagaaagcttcaatcccatttatatgatg
gccgattccggcgctcggggtagtaaagatcagatgcgccagttggcgggtatgcgtgga
ttgatggccaaaccgtcgggtgaaattatcgaaacccccattcaggccaatttcagggag
gggctgtcggtactgcagtattttatttccactcacggtgcgcgcaaaggccttgccgat
actgccctgaaaaccgccaactccggttatctgacccggcgtctagccgacgtggcgcag
gactgcgccgtggttgaagacgactgtggggtgacacagggggtggaggttgaaccgctc
ctcgaaggtggcgaagtcatccagcgcctgagcgagcgcatcctcggccggaccacggta
aaggatatcctggacccgtttaccgatgaagtgattgttcgtgccaacaaggaaatcaac
gagaaagatgcgcttaaaattgaaaatgccggtgtgaccaacgtgctgatccgatccgtg
ttgacctgccggaccaagcacggtgtctgcgccaaatgctatggacgggacctggcccat
gggcggaccgtagaaatggggcaggcggttggtatccttgccgctcaatccatcggtgag
cctggaacccagttgaccatgcgtacatttcatattggtggtacggccagccgtcgggtt
gaacaggcggatatccgcgcccgtacagtgggtaaaatcaaattcgtcgatctcaacgtg
gtcagaaatgccgaaaatgaattgattgtcatgaaccgccggggaggcgagtttgccgtt
gtgggtgaaaccggtcgtgaacgtgagcggtgtccggtcatttacggcgcccatatcgtt
gtgcaggagggacaggaggtaaaacccggtgatctcttggcggtctgggacccattcacc
acgccgattatcaccgaggtcgatggatcgatcaagtttggtgacttgattccgggcaaa
accattcaggaaaaagtggacccggtgacaggcaaatccagccgtacggtaattgaatcc
aaaacagccgaagaacgtcccagaatttccatcaaaggagaagacggtaagacggccaaa
ctgcccaaggggtcggggatggcccggtatatgctgccggtggatgccattgtaatggtg
gaagagggagatccggtgaaagccggcgacatcatcgccaaactaccgcgagcaacgacc
aaaaccaaggatattaccggtggtcttcctcgtgtggccgaactgtttgaggtgcgcaaa
ccaaaggaagtggccgtcttaagtgaaatcgacggttatgtttccatctccaaggccacc
aaaaaaggtaaacaacgcgtcaccatttctccggtggatgtaggagacaagaaagaatat
ctgattccacggggaaaacacatcaatgtctacgaaggggattatattcgtgccggtgaa
ccgctcattggcggtgccgccaatccccaagacatcctgaaaattaaaggcgaggtggcg
ctggccaaatatttggttgatgaagttcaggaagtataccggctgcagggtgtgcgtatc
aatgataagcatatcgaagtgattgtgcgccagatgatgcggcgggtcaaagtggtggat
attggagatacggattttatcctcgaagagcaggtcgataaaacgacgttcgaggaagcc
aacgaggcgattatcgccaaaggcggcaagccctccatcgccgagccattgatcctcggc
attaccaaagcgtcattgagtacggacagctttatttctgcagcatcttttcaggaaaca
accaaggtgctgaccgatgccagtatcgccggttctgaagatcgactgcggggcctcaag
gaaaatgtcattatggggcgaatcattcccgccggtacaggggtgattgaataccgggat
ttatccgtgggtgccagtggtagggaatga
DBGET
integrated database retrieval system
