Desulfosarcina variabilis: Dvar_19800
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Entry
Dvar_19800 CDS
T10869
Name
(GenBank) RpoA: DNA-directed RNA polymerase, subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dvar_19800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvr03021
]
Dvar_19800
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_19800
Enzymes [BR:
dvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dvar_19800
Transcription machinery [BR:
dvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dvar_19800
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dvar_19800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
YkuD
Motif
Other DBs
NCBI-ProteinID:
XPS83962
LinkDB
All DBs
Position
2220019..2221038
Genome browser
AA seq
339 aa
AA seq
DB search
MSKNELMYMNWREMIKCDKVRVSSTEAYGKFVCEPLERGFGITLGNSLRRTILSSLYGAA
IVSVRFDSVEHEFSVIPGVIEDVSEIILNLKEVRLKMDDATPRTVEINTSGECVVTAGDI
ISEDGRVEILNPDQHIATLTGDGKLTMTMVVKVGKGYALSEANKDEDTPLGTIPIDAVFS
PIQRVNYVVGNARVGQRTDYDKLTLEVWTDGSVTPEDAVAYGSKILKEQLSIFINFDEDA
EPQIDTDDDEQEKPAFNDNLYRSVEELELSVRSANCLKNAEILKIYQLVQKTETEMLKTK
NFGRKSLNEIKEVLSEMGLSLGMKLENFVPPEESTEEGE
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaacgaacttatgtacatgaactggcgcgagatgataaaatgcgacaaagtg
cgcgtcagcagtaccgaggcttatgggaaatttgtctgtgagcctttagagcgagggttt
ggcataacgctagggaactctctgcgaaggacgattctatcgtctttgtacggtgctgcc
atcgtgtctgtccggtttgattctgttgaacatgagttcagtgtgattcctggcgtgatt
gaagatgtatctgaaattattttgaatctcaaagaagttcgcttaaaaatggatgatgcc
acgccacgcacggttgagatcaatacaagcggggagtgcgtggtaacagctggcgacata
ataagtgaagacgggcgcgttgaaatccttaaccctgaccaacacattgccaccttgacc
ggtgatggaaaactaaccatgaccatggtagtaaaagttggtaaaggctatgccctttcg
gaagcaaacaaggacgaagacacaccgcttggaacgattcccattgatgctgtattttcc
ccgattcaacgcgttaactatgtggttggcaatgcgcgggtggggcaacgtaccgactat
gacaagcttacgcttgaagtctggacagatggtagtgtaacaccagaagatgcagtcgct
tatggttcaaagattctaaaggagcaattaagcattttcattaattttgatgaagacgcc
gaaccgcaaattgatactgatgatgatgaacaggaaaaaccggcctttaatgacaattta
taccgaagtgtagaggaactcgaactttccgttaggagcgcaaactgcctcaaaaatgcc
gagattctcaaaatttaccaactggttcagaaaaccgaaaccgaaatgctgaaaacgaaa
aacttcggtcgaaaatcattgaacgaaataaaagaagtgttgtcagagatggggctttca
ttaggtatgaaacttgaaaattttgtcccacctgaagaatccacggaagaaggggagtag
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