Desulfosarcina variabilis: Dvar_20260
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Entry
Dvar_20260 CDS
T10869
Name
(GenBank) Nfo: endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dvar_20260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_20260
Enzymes [BR:
dvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Dvar_20260
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Dvar_20260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
XPS84008
LinkDB
All DBs
Position
2267476..2268324
Genome browser
AA seq
282 aa
AA seq
DB search
MKYVGAHVSTAGGVENAPLNAKAIGATAFALFTKNQRQWKAKPLTDRSIRRFKENCASAG
FTPEQILPHDSYLINLGHPEAEGLKKSRAAFIDEMQRCRQLGLKFLNFHPGSHLKKISEK
DCLTRIAESINLALAKTAGVIAVIENTAGQGTNLGYRFEHLAAIIEQVDDQSRVGVCLDT
CHTVSAGYDLTTPDGYKDTLKRFEDVVGLSYLKGLHLNDGKKPLGSRVDRHERLGKGTLG
LETFRMIMNDARFENMPMILETPEPGSWAEEIRMLMEMIRPK
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgttggcgcccatgtaagcactgccggcggtgttgagaatgcgccgttgaat
gccaaggccatcggcgccacggcgtttgcgctgtttaccaagaaccagcgtcagtggaag
gcaaagccgctcaccgatcggtcgatccgtcggttcaaggaaaattgtgcgtcggcaggt
ttcacaccggaacagattttgcctcacgacagctatctgatcaacctggggcatccggaa
gccgaagggctcaagaagtcacgcgcggcatttatcgacgaaatgcagcgctgccggcaa
ttggggctcaagtttctcaactttcatccgggcagccatttaaaaaaaatcagcgagaag
gattgccttacgcgtattgccgagtccatcaacctggctttggcaaagaccgccggtgtg
attgcggtgattgagaacaccgccggccaggggaccaatctcggttatcgtttcgagcac
ctggcggccatcattgaacaggttgacgatcaatcccgggtaggcgtctgtctggatact
tgccatacggtttccgccggttatgacctgacaacgccggatggttataaagacacgctg
aagcgctttgaggatgtggttggcttgtcttacttgaagggattgcatttaaacgatggt
aaaaaaccgctgggcagtcgtgtggatcgtcatgagcgcctgggaaaaggaacgctgggt
ctggaaaccttccggatgatcatgaacgatgcgcgtttcgagaacatgcccatgattctg
gaaactcccgaacccggcagctgggccgaggaaattcgaatgttgatggaaatgatccgc
ccaaaatag
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