Desulfosarcina variabilis: Dvar_21510
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Entry
Dvar_21510 CDS
T10869
Name
(GenBank) YhaM: 3'-5' exoribonuclease
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
dvr Desulfosarcina variabilis
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvr03019
]
Dvar_21510
Messenger RNA biogenesis [BR:
dvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dvar_21510
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
tRNA_anti_2
HDOD
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
XPS84133
LinkDB
All DBs
Position
2407324..2408265
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AA seq
313 aa
AA seq
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MSKRFVSELVAGDAVDDVFLLAERNVAHKKDGNPFLNVTLADRTGQVKGVVWDQVERILA
AAAEGDFVHVRAQVGEYRGNLQLVVKDMAGVPADQVDAADFLAATTRDVTKMMDRLQEMT
GRMQDPHLAALFALFWQDADFVSDFMRAPAAKMMHHAYIGGLLEHTLSMAVLAEMVGSHY
SGVDRDMLLAGVILHDVGKLRELEYTSRIDYTDQGRLLSHIVIGLAMLDEKLKQVPDFPE
TKAHLLKHMLVSHHGERAFGSPEPPKTIEAVLLNYIDEIDSRVNSIREFVAKDTSEGNWT
SYHRLLERHLYKK
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacggtttgtttctgaactggttgccggcgatgccgtcgacgatgtgtttctg
ctggccgagcgcaatgtggcccataaaaaagatgggaatccgttcctcaacgtgaccctg
gccgatcgtaccggtcaggtcaaaggcgtggtatgggatcaggtggagcgcattcttgcc
gctgccgccgagggggatttcgtgcatgtacgtgctcaggtgggggaataccgcggcaac
ctgcagctggtggtcaaagatatggcgggggtaccggcggatcaggtggatgccgcggat
tttctggccgccaccacccgcgatgtgaccaaaatgatggatcgcctgcaggagatgacc
ggccgcatgcaggatccgcatcttgcggccctgttcgcgctattctggcaggatgcggac
tttgtgtctgatttcatgcgtgcgccggcagccaaaatgatgcaccatgcctatattgga
ggccttttggaacatacgctttccatggccgtgctggcggaaatggtcggcagccattac
agcggtgtggatcgggatatgctgctggccggggtgattctccacgatgtgggcaaactt
cgcgaactggaatacaccagtcgcatcgattacacggatcaggggcgcctgctcagtcat
attgtaatcggtcttgccatgctggatgagaaactgaaacaggtgcctgattttcccgaa
accaaggcccacctgctcaagcatatgctggtcagccaccatggtgagcgggcgtttggg
tcacccgagccgcccaagaccatcgaggccgtgctgctcaactacattgatgaaatcgac
tcgcgggtcaacagtatccgcgaatttgtcgccaaggatacgtcggagggtaattggaca
tcctatcatcggctgcttgagcgacatttgtataaaaaataa
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