Desulfosarcina variabilis: Dvar_23680
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Entry
Dvar_23680 CDS
T10869
Name
(GenBank) HupA1: DNA-binding protein HU 1
KO
K05787
DNA-binding protein HU-alpha
Organism
dvr Desulfosarcina variabilis
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dvr03032
]
Dvar_23680
03036 Chromosome and associated proteins [BR:
dvr03036
]
Dvar_23680
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_23680
DNA replication proteins [BR:
dvr03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Dvar_23680
Chromosome and associated proteins [BR:
dvr03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
Dvar_23680
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
Dvar_23680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_euk_1
CAP-ZIP_m
HU-HIG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
XPS84350
LinkDB
All DBs
Position
complement(2656366..2656635)
Genome browser
AA seq
89 aa
AA seq
DB search
MNKGDLVNEVAKIVSTKKQAQEVIDCVFSTLTASLQRDEPVQIAGFGSFKTSRREARTGR
NPQTGAEIKIAARTVPKFVPAKALKDAVN
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaggtgatttagtcaatgaagttgcaaaaatcgtttctaccaaaaagcaagcg
caagaagtcatcgactgtgttttttcgaccctgaccgcttccctgcaaagagacgaaccg
gttcaaattgccgggtttggcagttttaaaaccagcaggcgtgaagcacgcaccggtcgt
aacccccaaaccggtgctgaaataaaaatcgcggccagaaccgtgcccaagttcgtccct
gccaaggcccttaaagatgccgtaaattaa
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