Desulfosarcina variabilis: Dvar_24640
Help
Entry
Dvar_24640 CDS
T10869
Name
(GenBank) RecQ: ATP-dependent DNA helicase
Organism
dvr Desulfosarcina variabilis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
AAA_22
ResIII
Viral_helicase1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
XPS84446
LinkDB
All DBs
Position
2778874..2784093
Genome browser
AA seq
1739 aa
AA seq
DB search
MGREQLISKTLLLDLETTRTGRLKHLGAVLGDTVIDIQAGPFRPALKQLDGLAGGADYIL
GHNLLGHDFPILKAAYPTLQVLIKPVIDTLYLSPLAFPQNPYHRLVKDYKLVRATLNDPV
ADARLAASVFDDQLAQFAGLAENQPRQLDFFHYCFDGATFNGFSGQGLASVFSALGARGF
GSADAANEWFVKKTDGGVCRSAAGGLIDVFDDPARRPMLAYCLAWLTVAGSNSVLPPWVR
HRFPEISAMLTRLRDEACEDPHCAYCRESHDPDRHLRRFFGFSAFREKPATNEGQSLQRE
IVKAGMADRPLLAILPTGGGKSLCYQLPALVRHWRRGRLTIVISPLQALMKDQVDNLVKN
TGTPFADAVYGLLTPIERGAVLERVRLGDVAILYLAPEQLRSRSVRYVLRQREIGCWVFD
EAHCLSKWGHDFRPDYLYAARFIREFSIENNQAPPPVCGFTATAKLDVIEELTTHFRDVL
DQELVLFEGGVGRDNLVFEVLPVAPPQKYEQTLRLVEEALAEEARASVIIYAATRRRTEE
IRDFLHHQGVRVEAFHGGLEAKQKRDVIEAFTDGDVPVISATNAFGMGVDKENIRLVLHV
DMPGSLENYIQEAGRAGRDRQPARCILLYDPADADCQFTLGALSEVKQREIQRILRALRR
AKRNTAGEIVVTSDELLRGEALAGESGQNRDIRDTRVKTAISWLERAGFLQRNQNLTDIF
QGRPLVTSLDEARARMDSLNLSKATTGLWLNILRLIFNAPPDQGLSADTIAEGLFPDAGP
LKQMEAATGMTPAQMVIQALHDMADARLLDRGLMLSAILRPKGKNNAAVRLQRVMDIETR
LLGILRAEDPDADDGRWVPLSVRRLCQRLRNEDVETTTTVVQSLIRGLSYDGKGLAAASG
SIALRHASRDRYDVRLQRSWEAIVKTVNLRHNVAHAILQELLRLIGEKKTHPEGDVNISF
SSNDLAAAMKRDITLMGTVKKVLPAIDRALMFLHEHKVIHLQGGMAVFRQAMTIRLAPRA
KGRRYTRGDFKPLAVHYRERRFQVHVMMEYAALALAKIASALTLVLDYFSMGRVRFLNRY
FSGRKDLVEKATTAEAYRRIVERLGNPVQIDVVGRPPDDNLLVLAGPGAGKTTVIVHRCA
YLLQVERIPARQILVLCFNHNAAVTLRKRLYALIGSRARGLTVVTYHGAAMRLAGISVRD
LMDTRDRDGTAPPIDFDGIINTALRLLKGEADIPESDETDALRDQLLGGYSHILVDEYQD
IDQAQYELVVAIAGRTLDEADGRLSILAVGDDDQNIYAFRGTNVQFIRQFQEDYKATPTY
LVENYRSSRHIIHAANQLIKHNRDRMKGGYPICIDRAREHVEAGGRWARLDPVAQGRVQI
MPVADPIDQAATVLAEIERLRSLDPDFRAEHCAILARTRAVLPPMRGLLEKNEYPVKRIL
SKSFPIHRVREVAGLMDRLRFAETANLRASDLIKHLQDAAGGQPAGVWQRMLSGFLENDL
AETGDALMPAGYRLDKLFEFLAEQRHEKIIGDGIFLGTLHAAKGMEFDHVFILDGDWGRP
RTADEREAERRLLYVGMTRARQTLGLMRMRHQPNLLLADLAGKHMLPRKRVEEHRIDDDF
VCCDYAILGLEDVFMDYAGTFAPAHPIHRHLSDLKTGHTVRLVPDKRGIAIFDGTYFRLG
RLSADAARRWAPRMDAINSVRVLAILTRERLDPDPSFQREIKTDRWELPVLEVAFRREE
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atggggcgggagcaactgatttcaaaaaccctgctgcttgacctggaaaccacccgtacg
gggcgtctgaaacacctgggcgcggtgctcggcgacacggtgatcgacatacaagccggt
cctttccggcctgcgctgaaacagctcgatgggctggccggcggggctgactatattctg
ggccacaacctgctggggcatgattttccgattctgaaggctgcctatccaacactgcag
gtgttgatcaaaccggtgatcgacaccctttacctgtcgcccctggcttttcctcagaac
ccctaccatcggctggtcaaggattacaaattggtgcgcgccacgctaaacgacccggtg
gccgatgcccggctggcggcctcggtgttcgacgaccagttggcgcagtttgcaggcctt
gccgaaaatcagccccgacagctcgatttttttcactactgctttgacggggcaaccttt
aacggcttcagcggccaggggctggcgtcagtgttcagtgccctgggggccaggggattc
ggcagtgcggatgcagccaatgaatggtttgtcaaaaagaccgatggcggagtctgccgg
tctgccgcgggtgggctgatcgatgtttttgacgacccggcccgacgtccgatgttggct
tactgcctggcctggcttacggtagccggatccaactcggtcctgccgccgtgggtgcgt
catcgctttcccgagattagtgcgatgttaacacgtcttcgcgatgaggcctgcgaagat
ccgcattgtgcctattgccgagagagccatgacccggatcggcacctgcgccgctttttc
ggattttccgcttttcgggaaaaacccgccacgaatgagggccaaagcctgcagcgggaa
atcgttaaggccggcatggccgatcgaccgcttctggccatcctgcccaccggtggcggc
aaatccctgtgctaccagttgccggccctggtgcggcactggcgacgcggacgtctcacc
atcgtgatcagcccgttgcaggccctgatgaaggatcaggtggacaacctggtcaaaaac
accggcacgccctttgccgatgcggtctatggcctgctgacccccatcgagcggggtgcg
gtgctggagcgggtgcggttgggggacgtggccattttatacctggcgccggagcagctt
cgcagccggtcggtgcggtacgtgctccggcagcgggagatcggctgctgggtgtttgac
gaggcccactgcctttccaaatgggggcatgattttcggccggactacctttacgcggca
cggtttatccgcgagttcagcattgaaaacaatcaggccccgccgccggtatgcggtttt
acggccacggccaagctggatgtcatcgaagagttgaccacccatttccgggatgtcctg
gatcaggaactggtgctgttcgagggcggcgtgggacgggacaatctggtttttgaagta
ctaccggtggcgccccctcagaagtatgagcagacgctgcggctggtcgaggaggcgctg
gccgaggaggcgagggccagtgtgattatatacgccgccacccgccgccgcaccgaggaa
atccgcgattttttgcatcatcagggcgtgcgtgtcgaggcattccatggcgggctggaa
gccaagcagaagcgcgatgtgatcgaagccttcaccgatggggatgtgccggtgatcagc
gccaccaatgcgtttggcatgggcgtggacaaggagaacatccggctggtgctgcacgtg
gacatgcccggttcactggagaattatattcaggaggcgggacgcgccggccgtgaccgc
caaccggcccgctgcattctgctctacgacccggccgacgcggattgccagttcaccctg
ggggcgctttccgaggtcaaacagcgcgagatccagcgcatcctgcgtgccctgcgccgg
gccaagcgcaacacggccggcgagatcgtcgtcaccagcgatgaactgctgcgcggggag
gcgcttgccggggaaagcgggcaaaaccgcgatattcgcgatacgcgggtcaaaaccgcc
atttcctggctggaacgggccggttttctgcagcgtaatcagaatctgaccgacatcttt
cagggccggcccctggtgaccagtctggacgaggccagagcgcgtatggattccctgaat
ctctcgaaagccaccaccggtctgtggctgaatattttgcgcttgattttcaacgcgccg
ccggatcagggtttgagtgcggataccattgccgaggggctgttcccggacgccggaccg
cttaaacagatggaagcagcgacgggcatgaccccggcccagatggtgattcaggccctg
catgacatggccgatgcccgcctgcttgaccgcgggctgatgttgtccgccatcctgcgg
cccaaaggcaagaataacgccgctgtgcggctgcagcgcgtgatggatatcgaaacccgc
cttttgggcatcctgcgcgccgaggaccccgatgccgacgacggccgctgggtgccgctg
agtgtccgccgcctgtgccagcgattgagaaacgaggatgtggaaaccaccaccaccgtg
gtgcaaagtctgattcgggggctctcctacgacggcaagggattggccgcggcttcaggc
agcatcgcgctcaggcatgcgagccgcgatcgctacgatgtgcgtctgcagcgcagctgg
gaggccatcgtcaaaaccgtgaatctgcgccacaatgtggcccacgccatcctccaagaa
ctcttacgtctgataggagagaagaaaacccatccggaaggcgacgtcaatatctctttc
tccagcaacgatctggccgcggccatgaagcgtgacatcaccctgatggggaccgtcaag
aaagtgcttccggcaatcgaccgcgcattgatgttcctgcacgagcacaaggtgatccat
ttgcagggcggcatggctgttttccggcaggccatgaccattcggttggcgccccgggcc
aaggggcggcggtacacccggggcgattttaagccgcttgccgtgcactaccgtgaacga
cgcttccaggtgcatgtgatgatggagtatgctgccctggcactggccaagatcgccagc
gccctgacgctggtgctggattacttttccatggggcgggtgcgttttctcaatcgctat
tttagcggtcgcaaggatctggtcgaaaaggccaccacggccgaggcgtaccgccgtatt
gtcgagcggctgggcaatcccgtgcagatcgatgtggtgggacgtcccccggacgacaat
ctgctcgttctggccggaccgggagcgggtaaaaccaccgtaattgtgcatcgctgcgcc
tacctcttacaggtggaacggattccggcccggcagatcctggtcctctgcttcaatcac
aacgccgcggttaccttgagaaaacggctttacgcactgatcggcagccgggcgcggggt
ctgacggtggtcacctatcatggggcggccatgcgcctggccggtatcagcgtcagagat
ctgatggacacgcgtgaccgggacgggactgccccgcccattgattttgacggcatcatc
aataccgccctgcgactgctcaagggagaagccgacatccctgaaagcgatgagaccgat
gcgctgcgcgaccagttgcttggcggctacagccatattctggtggatgaataccaggac
atcgaccaggcgcaatatgaactagtggtggccattgccggtcgcaccctggacgaggcc
gacgggcgcctgtcgatcctggccgtgggcgatgatgatcagaacatctatgccttcagg
ggcaccaacgtgcagttcattcgacagtttcaggaagattacaaggctaccccgacgtat
ctggtggagaactaccgctccagcagacacattatccatgcggccaaccagctgatcaaa
cacaaccgcgaccgcatgaaaggcgggtatcccatttgtatcgaccgggcccgtgagcat
gtcgaggcgggcggccgttgggcccggttggatccggtggcgcaagggcgcgttcagatc
atgccggttgcagacccgatagaccaggctgccaccgtgctggctgagatcgaacggctg
cgcagcctggaccccgacttcagggctgagcattgcgccatcctggcccgtacgcgggcc
gtgttgccgcccatgcgcgggctgctggaaaaaaatgagtacccggtgaaacgcatcctt
tccaaatcctttcccatccaccgggttcgggaggtggccggtctcatggatcgattacgc
tttgctgaaactgccaatctacgggcttcggacttaatcaagcatttacaggatgccgcc
ggtgggcagccggccggcgtgtggcagcgaatgctgtccggttttttggaaaatgatctg
gcagaaaccggtgatgcgcttatgcccgccggttaccggttggacaagctgttcgaattt
cttgccgaacagcgccatgagaaaatcattggtgacggcatttttctgggcaccttgcac
gccgccaaaggcatggagttcgaccatgtttttatcctggatggtgactggggccggccg
cgcaccgctgatgagcgggaggccgagcgccgtttactatacgttggtatgacccgggcc
aggcagaccctcggcctgatgcgtatgcggcatcagcccaatttgctgctggccgatctg
gccggcaagcatatgctgccgcgcaagcgcgtggaggagcatcgcattgatgacgatttc
gtttgttgcgattatgccatcctgggactcgaagatgtcttcatggattatgccggcacg
tttgctccggcccatcccatccaccgccatttgagcgatctgaaaaccggccatacggtc
aggttggtgccggacaaacgcggcatcgccatttttgatggaacctatttcagattgggc
cgtttgtctgccgacgccgcccggcgctgggcgccgcgtatggacgccatcaacagcgtc
cgcgtgcttgctattttaacgcgtgagcggttggaccccgacccatcctttcaacgagag
ataaaaaccgatcggtgggaattgccggttttggaagtggcgtttcgtcgtgaagaataa
DBGET
integrated database retrieval system
