Desulfosarcina variabilis: Dvar_29850
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Entry
Dvar_29850 CDS
T10869
Name
(GenBank) RnajA: ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvar_29850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvr03019
]
Dvar_29850
Messenger RNA biogenesis [BR:
dvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dvar_29850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XPS84967
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All DBs
Position
3371494..3373092
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AA seq
532 aa
AA seq
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MAVEYGDTIFVIDAGLMFPEAYMLGVDYVIPDIDYLRQNQSRLSGVVLTHAHEDHIGALP
FLLKEINVPIFGTPFTLGIVRHKLEEHDLLLSASLHEVLPREHLKIGPFDVEFIRVNHSI
VDGVGLAVRTPVGMVIHTGDFKMSHTTMEGMLTDVNRFAQIGEEGVLALLSDSTNVEKEG
HTISSHEIGDELARITEAASGRIIVALFASNIARIQQIVNIAQTRGRKIIFNGRSIEVSV
SIARKLGYLKIPEGMEIDIDELGTYSDDEVILVTTGSQGEPMSALARMAAGTHRQIKIHS
ADTVVLSSKFIPGNEKAIGNIINNLYRQGADVVYEKISKIHVSGHAFQEELKMMISLTKP
RFFMPVHGEYRHLVLHSRLAQQMGIPKDHLILAQNGQVIEMNENGFKIRDSICAGRVLID
GKGIGDVGRSVLKERRVLSEEGLVVVNMAFDEETGIVVYGPEIVSRGFVFETETGYLLQD
AQCVILEIVEEITPDVPGRVDKIRARLQTALRQYFFYTIGRRPVILPFLVEV
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagtatggcgataccattttcgtcattgacgccggcctgatgtttccggaa
gcctacatgttgggggtggattatgttattccggacattgattacctgcgtcagaaccag
tctcggttgtcgggcgttgtgctcacccatgcccacgaggatcacatcggggcgcttccc
tttctgctaaaagaaatcaatgtgccgattttcggcacccccttcacgttaggaattgtg
cgtcacaagcttgaagagcatgatttactgctcagcgcatccctgcacgaggtgctgccc
cgtgaacatttaaaaatcggcccctttgatgttgagtttatccgggttaaccacagcatt
gtggatggtgtggggctggcggtacgtacaccggtcggaatggtgatccataccggcgac
ttcaagatgagccacaccaccatggagggcatgctcaccgacgtcaaccgctttgcccag
atcggagaagaaggggtcttggcgttgctctcggactccacaaacgtggaaaaggagggc
cacaccatttcatcccacgagatcggcgatgaactggccagaatcaccgaagctgccagt
ggacggatcatcgtggccttatttgcttccaacatcgcccgaattcaacagatcgtcaat
attgcccagactcggggccgaaaaattatcttcaacggacgcagcatcgaagtcagcgta
tccatcgcccgcaaactggggtatttgaagattcccgaaggcatggaaatcgatatcgac
gaattggggacctattccgacgacgaggtgatcctggtcaccaccggtagtcagggcgag
cccatgtcagccctggcccgcatggctgcaggcacgcaccggcagatcaagattcactcg
gcggacacggtagttctttcctcaaagttcattcccgggaatgagaaagccattggtaac
atcatcaacaacctctaccggcagggcgcggacgtggtctatgagaagatttccaagatc
cacgtttccgggcatgctttccaggaagagctcaaaatgatgatcagccttaccaaaccg
cgttttttcatgcccgtgcacggtgaatatcgtcacctggtcctgcacagccgtctggcg
cagcagatggggattcccaaggatcacctgattctggcccaaaacggccaagtgatcgaa
atgaatgaaaacggattcaagattcgggacagtatctgcgcagggcgggttttgattgac
ggtaaaggaatcggtgacgtggggcgcagtgtgctcaaggaacgtcgggtactgtccgaa
gagggactggtagtcgtcaatatggctttcgatgaagagaccggtattgtggtgtacggt
cctgaaatcgtgtcccgcggatttgttttcgaaaccgaaacgggctatttgttgcaagat
gcccagtgtgtcatccttgaaatcgtggaggagatcacgccggatgtaccgggccgggta
gacaaaatccgcgcacgtttgcaaacggccctgcggcagtatttcttctataccatcggc
cggcgcccggtcattttgccttttctggtggaagtctga
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