Desulfosarcina variabilis: Dvar_32230
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Entry
Dvar_32230 CDS
T10869
Name
(GenBank) RpoN: RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
dvr Desulfosarcina variabilis
Pathway
dvr02020
Two-component system
dvr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Dvar_32230
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Dvar_32230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvr03021
]
Dvar_32230
Transcription machinery [BR:
dvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Dvar_32230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
DUF5054
FTA2
HTH_21
Motif
Other DBs
NCBI-ProteinID:
XPS85205
LinkDB
All DBs
Position
complement(3592641..3594074)
Genome browser
AA seq
477 aa
AA seq
DB search
MAIELRQQLKLTQQLIMTPQLQMAIKLLQLSRLELVDTIRQELEENPTLEELQETPDKTK
DGDTEETPAPTVEEAREVTIDEKINDDIDWSNYIDEYNAPGKINFEGENREAPQYEAFVS
SKESLSDHLLWQLLMLSPTDIEKQVGSLIIGNLNRDGYLQLSVEELSEQSGISIEMVEDV
LETMQSFDPVGVCARDLRECLLLQARMLDLNDSLVTDIISDHLKNLENKNFKAICKALKV
KQKDVITAVNVIRALEPKPGRQFSEETPHYIIPDIYVYKSEDDFVIVLNDDGMPKLRVNP
FYKRAITRQNEVSANAKDYIRDKMRSAAWLIRSIHQRQKTIYKVMESILKFQRDFFEKGV
AHLKPMVLRDVAEDINMHESTISRVTTNKYAHTPQGIFELKYFFNSSIKRVHGEDIASAS
VQAKIKKLIESENPKKPFSDSKMAEMLKADNIDIARRTVAKYREMMGILSSSKRKQF
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggcaattgaactcagacaacaacttaaactaacccagcagctgatcatgacgccacag
ctccagatggcgatcaaattactacagctgtcccgtctagagctggtggacaccatccgg
caggagttggaagaaaacccaacgctggaagaacttcaggaaacgcccgataaaaccaag
gatggcgataccgaagaaacgcctgcgcccaccgtcgaagaagcccgggaagttaccatc
gatgaaaagatcaacgatgacattgactggagcaattacatcgacgagtataatgcgccg
ggcaagatcaatttcgagggtgagaatcgggaagcgccgcaatatgaggcttttgtttcc
tcaaaggaatcactcagcgatcatctgctgtggcaattgttgatgctctcgccaacggat
attgaaaagcaggtgggcagcctgatcatcggcaacctcaatcgggatggctaccttcag
ttgtcggtggaagagttgtctgaacaaagtgggatttccatcgaaatggtcgaggatgtc
ctggagaccatgcagtcctttgacccggtgggtgtctgtgccagggacttgcgagaatgc
cttttgcttcaggcccgcatgctggatctgaacgacagcctggtcacggatatcatttcc
gatcatttgaaaaacctggaaaacaaaaacttcaaggcgatctgcaaggccttgaaggtc
aaacagaaagatgtaattacggccgtcaacgtgattcgtgcgctcgagccgaaacctggc
cggcaattcagtgaagaaaccccgcactatattatcccggatatttacgtctacaaaagc
gaagatgattttgtgattgttttgaatgacgatggcatgcccaagttgcgggtcaacccg
ttttacaaacgcgcgattacccgccaaaatgaagtcagtgccaacgccaaggattacatt
cgcgataaaatgcggtccgccgcctggctgattcgcagtatccaccaacgccagaaaacc
atctacaaggtcatggaaagcatcctcaagtttcaacgggacttttttgaaaagggtgtg
gcgcatttgaagcccatggtcctgcgcgatgtggctgaggatatcaacatgcatgaatcc
accatcagccgggtaaccaccaataaatatgcccatacgccgcagggcatttttgagctc
aagtattttttcaacagttctatcaagcgcgtccacggtgaggacatcgcttcggccagc
gtacaggccaaaatcaaaaaattgatcgaaagcgaaaatccgaaaaagccttttagtgac
agcaagatggctgaaatgctcaaagccgataatatcgatattgcccgtcgaaccgttgcc
aaatacagggagatgatgggcatcttatcctccagcaagcgcaagcagttctga
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