Desulfosarcina variabilis: Dvar_35970
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Entry
Dvar_35970 CDS
T10869
Name
(GenBank) Mfd: transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dvar_35970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_35970
Enzymes [BR:
dvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dvar_35970
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dvar_35970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
MFD_D3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XPS85579
LinkDB
All DBs
Position
complement(4054657..4058169)
Genome browser
AA seq
1170 aa
AA seq
DB search
MFVDHQQEEIASRGLVRAIGRRTGPLTITGLAGSAAAYLATAIVRQLSRPVLLITASAKL
ADQRRIEIECFNSETGQSAAYFPAYNLSPFKFMAYHNETAARRIRALYTLFSGSFEKGPQ
VTVTTAAALRQRLIPKSVMADYAELLIAEEEIEPDRLVAKLVAGGYTRTVVVEEPGDFCV
RGGIIDIFSPLYDEPLRIELFGDFAESIRFFSPSSQRSRDHAQEAVILPAREVTLEKDRL
DEIINRLRGQAIHQDLPPTTVRDLVQRIKDQGVFPGIENLTPLIYPRMDTLFDYLPPDTV
IIAENPAELGQAADKSAGQAQVNYDKALSDQRICVRPEALFLSWAEIESGLTERQAISLT
PLALTGQAQRLTVEATMTDNGDLAQTMDQARKGEQPAQPLVQWIGDQQAAGRTLVMVCET
ARQVDRLAAILAPYQVKALVKEPFPLSGRPKGVFICQGRLTGGFVWPADRLSVVTETEIF
GPRTKRSTRPAKRVHTDLLTFSDLKQGELVVHDEHGIGRYEGLVKLKLEGTVNDFLLVVY
RDDDRLYLPVDRLGLIQKYMGVEGTMPALDKMGGRSWERAKEKVRQSAEKIAGELLKIYA
QRKIKAGHGYGGADSHFADFEADFPYEETPDQLQAIEDVLADMRDPNPMDRLVCGDVGYG
KTEVALRASFLAVSEAKQVAMLVPTTVLAEQHHATFSRRFDNYPIKVACLSRFRSKAEQR
SIVEEIKKGTVDIVIGTHRLLQKDVTFNDLGLFIIDEEQRFGVRHKEKLKRLRATVDVLA
LTATPIPRTLHLSMMGIRDISVISTPPEQRHPIITYVCEFDETVVGEAIRSELARGGQIF
FVHNTVNSIERMAGRLKQIVPEVRLAVAHGQMAEDALETVMMQFMENEIDMLVCTTIIES
GIDVATANTILVNRADRFGLAQMYQLRGRVGRSDEQAYAYLFIPEESRLGIDAQKRLKVL
MEHSDLGSGFQIAMNDLKIRGGGAILGASQSGHIAAVGYDMFLKLMEEAVAQLKGEPITE
GLEPEINLPMSAYIAETYVPDIDQRLLIYRRLAKVTDLKQISAMKAELVDRFGPLPEETE
NLLLKIMLRVLCVRAGVKRLDLFGQQLALAFSDMHQQRPLGIVEMINAGNGRYQLTPDYL
MKTALSKSAPRAMLAETKNILIEIAQHVNS
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgtggatcaccaacaagaggaaattgcatcacggggactggtccgcgccattggc
cggcgcaccggtcccctgaccatcacgggccttgcgggcagcgccgcagcctacctggcc
acggccattgtccgccagttgtcgcgtcccgtgctgttgatcaccgcctcggccaagctg
gccgaccagcggcggattgaaatcgagtgtttcaacagtgaaaccggacaatcggccgct
tattttccggcctacaacctttcgccgttcaagttcatggcctaccacaatgagaccgcc
gcccggcgcatccgggccctgtacacccttttttccggttctttcgaaaaaggcccccag
gtcacggtcaccacggctgcggccctgcgccagcggttgattcccaagtccgttatggcc
gattatgccgagctgctcatcgccgaggaggaaatcgagccggaccgcctggtggccaaa
ctggtggccggcggatacacccgcacggtggtggtcgaagagcccggtgacttttgcgtg
cgcgggggtatcatcgacattttctcgcccttgtacgacgagcccctacgcatcgaactg
ttcggtgactttgccgagagcatccgttttttttcaccatccagtcagcgcagccgtgac
catgcccaggaggcggtgatccttccggcccgggaggtaaccctggaaaaagaccgcctg
gatgaaatcatcaaccgcctgcggggccaggccatccatcaggacctgccaccgaccacg
gttcgggaccttgtgcagcgaatcaaggatcagggcgtctttcccggtatcgagaatctg
acccctttgatctatccccgcatggacaccctttttgattacctgccgccggacaccgtg
atcattgccgagaaccctgccgaactgggtcaggcagccgacaaaagcgccgggcaggcc
caggtcaactatgacaaggccctttccgaccagcgcatttgcgtccgccctgaagcgctg
tttttaagctgggcggaaatcgaatccggtctgaccgagcgtcaggcgatttcactgacg
ccgctggcgctgaccggccaggcccagcgtctgaccgtcgaggccaccatgacggacaat
ggcgacctggcccaaaccatggaccaggcgcgcaaaggggagcagcccgcccagccgttg
gtacagtggatcggcgatcagcaggcagccggccgtaccctggtgatggtctgcgagacc
gcgcggcaggtcgaccgtttggccgcgatcctggcgccctatcaggtgaaggctttggta
aaagaaccctttcccttgtcagggcgacccaagggggttttcatctgccagggacggctg
accggcggctttgtatggccggcggaccggctgagcgtggtcacggaaaccgaaattttc
ggtccgcgaaccaaacgttccacccgccctgccaaacgcgtgcacaccgatctgctcacc
ttttccgatctcaagcagggtgagctggtcgtccacgatgagcacggcatcggccggtac
gaggggctggtcaaactgaaattggaaggcacggtcaatgattttctgcttgttgtctac
cgggacgacgaccggctctacctgcccgtggaccgcctgggcctgatccaaaaatacatg
ggcgtcgagggcactatgccggccctggacaaaatgggcggccgctcctgggagcgggcc
aaggaaaaggtgcgtcaatccgccgagaaaatcgccggcgaattgctcaaaatctatgcc
cagcgcaaaatcaaggccgggcatggctatggtggggcagacagccatttcgcggacttc
gaggcggattttccctatgaggaaaccccggaccagttgcaggccatcgaagacgtgctg
gccgacatgcgcgaccccaatcccatggatcgcctggtatgcggcgatgtgggctatggc
aagaccgaggtggccctgcgcgcctcgtttctggcggtcagcgaggccaaacaggtggcc
atgctggtaccgaccacggtgctggccgaacagcaccacgccaccttttcgcggcgtttc
gacaattacccgatcaaggtagcctgcctgagccgcttccgctccaaggccgagcagcgc
agtatcgtcgaggaaatcaagaaaggcaccgtggacattgtgatcggcacccaccgcctg
ctgcaaaaggatgtcacctttaacgatctgggccttttcatcattgacgaggaacagcgc
tttggcgtacggcataaggaaaaactcaagcgcctgcgtgccacggtggacgtgctggcc
cttaccgccacgccgattccccgcaccctgcatctgtccatgatggggattcgtgacatc
agcgtgatttcgacgcccccggaacagcgtcatcccattatcacctatgtgtgcgagttc
gatgaaaccgttgtcggcgaggccatccgaagcgaattggcccgcggtggacagatcttt
ttcgtgcacaacaccgtgaattccatcgaacgcatggccggccgcctcaaacagatcgtt
cccgaggtccgcctggccgtggcccatggacaaatggccgaggacgcccttgaaacggtg
atgatgcagttcatggagaacgaaatcgacatgctggtgtgcacgacgatcatcgagtcg
ggcattgacgtggccacggccaacaccatcctggtcaaccgggccgatcggttcggcctg
gcccagatgtaccagctgcgcggccgggtgggtcgctcggacgagcaggcctatgcctac
ctgtttattcctgaagagagccgcctgggcattgacgcccagaagcgcctgaaagtgctc
atggagcacagcgatctgggatcgggctttcagatcgccatgaacgatttgaaaatccgt
ggtggcggcgctattctgggagccagtcagtcgggccatattgccgccgtgggctatgat
atgtttctcaaactcatggaagaggccgtggcccagttaaagggcgagcccattaccgaa
ggcctggagccggaaatcaacctgcccatgtccgcctacatcgccgaaacctatgtgcct
gatatcgaccagcggcttttgatctaccgccgcctggccaaggtgaccgatctcaaacag
atctcggccatgaaagccgagctggtcgatagattcggccccctgcccgaggaaaccgaa
aacctgctgctcaaaatcatgctgcgggtgctgtgcgtccgggccggcgtcaaacgtctg
gatctttttggtcagcaactggccctggccttcagcgatatgcatcagcaacgccccttg
ggcatcgtggaaatgatcaacgccggcaacggccgctatcagctgacgccggattacctg
atgaaaaccgcgttatccaaaagcgcaccccgcgccatgctggccgaaacgaaaaacatc
ttgatcgaaatagcgcaacatgttaactcctga
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