Desulfosarcina variabilis: Dvar_39720
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Entry
Dvar_39720 CDS
T10869
Name
(GenBank) RumA: 23S rRNA mehtyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dvr Desulfosarcina variabilis
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dvr03009
]
Dvar_39720
Enzymes [BR:
dvr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Dvar_39720
Ribosome biogenesis [BR:
dvr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Dvar_39720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
Cons_hypoth95
TRM5-TYW2_MTfase
TRAM
Methyltransf_11
PrmA
PCMT
TPMT
FtsJ
Methyltransf_37
Methyltransf_ANTKMT
Methyltransf_4
Methyltransf_12
N6_N4_Mtase
Ubie_methyltran
UPF0020
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
XPS85954
LinkDB
All DBs
Position
4463356..4464744
Genome browser
AA seq
462 aa
AA seq
DB search
MALKKKQIVECDIIDVAFGGKGLAKIDGMAVFVDQTVTGDRVAARIIRKKKNYAEAVVDQ
LIVPSEKRIDPPCPYSGFCGGCKWQFIDYAYQTALKRRHVAESLEHIALLKDAPVYSTIL
SETVFGYRNKMEFSCSDRRWLMPHELGTDADIHFALGLHVPGTFHKVLDTRACLLQPAMG
NQILETVRRYMRASDRPVYGLRSHQGFWRFLMLRHSVDFDQWMVNIVTACEDQAAVMPLA
ETITAEFPQVACVVNNITSRKAGVAIGEREITLAGDPVLNDRIGPFSFEISANSFFQTNT
RGAEKLYSTVGRFAELSGNETVLDLYCGTGTIAIWLAGQAAEVIGLELVESAVLDARKNC
RTNGIDNCSFILGDIKDTLQTISQVPDLLVIDPPRAGMHKDVVQAVLSMAPEKIVYVSCN
PATMARDFLELKTRYRMEAVQPVDMFPHTFHIEAVAKLKKIG
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggcacttaagaaaaaacagattgttgaatgtgatattattgatgtggcttttggcgga
aaaggactggcaaaaattgatggcatggccgtttttgtcgaccagaccgttaccggcgac
cgggtggcggcgcgaattatcaggaaaaaaaagaactatgccgaagccgtggttgatcag
ctgatcgtcccctcagaaaaacgcatcgatccgccctgtccatacagcggtttttgcggt
ggctgtaaatggcagtttatcgactacgcttatcagacggcattgaaacgccgtcatgtt
gccgaatcattggagcacattgcgctgctgaaagatgcgccggtttattcaaccatttta
tcggaaaccgttttcggctaccgcaacaaaatggaattttcctgttcggatcggcgctgg
ctcatgccccatgaactgggcaccgatgcggatatccattttgcgctgggcttgcatgtt
cccggaacctttcataaagtcctcgacacgcgtgcctgtttgttgcaaccggcgatgggc
aatcagattctggaaaccgtgcgccgatatatgcgcgcatcggacaggccggtgtacggc
ctgcgcagccaccagggattttggcgttttctcatgcttcggcactccgtggactttgat
caatggatggtcaacatcgttaccgcctgtgaggatcaggccgctgtcatgccgctggcc
gaaacgattaccgccgaatttccacaggtggcgtgcgtggtcaataacatcaccagtcgt
aaggccggtgtggctattggagagcgggaaatcaccctggccggcgatccggtgctcaat
gaccgcatcggtccgttttcatttgagatctctgccaattccttttttcagaccaatacc
cgtggggcggagaaactgtattctacggtcgggcggtttgcagagttgtccggcaatgaa
accgttttggatttatattgcggaaccggtaccattgccatctggttggccggccaggcg
gctgaagttattggtctggaactggtggaaagtgcggtcctggacgctcgcaagaattgc
cgcaccaatggtattgacaactgcagttttattttgggtgacatcaaggataccctgcaa
accatcagtcaggttccggacttgttggttatcgatccgccgcgtgcgggaatgcacaag
gatgtggtgcaggcggtgctttccatggcgcctgaaaaaatcgtgtatgtgtcctgcaac
ccggccaccatggcaagggattttttagaactcaaaacacgctatcggatggaagcggtc
cagcctgtggacatgttcccacatacctttcatatcgaggcggtcgccaagttgaaaaaa
atcggatag
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