Desulfosarcina variabilis: Dvar_40820
Help
Entry
Dvar_40820 CDS
T10869
Name
(GenBank) DnaE2: DNA-directed DNA polymerase III, subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03030
DNA replication
dvr03430
Mismatch repair
dvr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dvar_40820
03430 Mismatch repair
Dvar_40820
03440 Homologous recombination
Dvar_40820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dvr03032
]
Dvar_40820
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_40820
Enzymes [BR:
dvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Dvar_40820
DNA replication proteins [BR:
dvr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Dvar_40820
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Dvar_40820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
UDG
HHH_3
Motif
Other DBs
NCBI-ProteinID:
XPS86064
LinkDB
All DBs
Position
complement(4581914..4585288)
Genome browser
AA seq
1124 aa
AA seq
DB search
MFTHLHCHCSHSLLDGLGNPDAWVEAAAKKNFKALALTDHGSCSAALEFYKAAKAAGIIP
IVGCEFYITDDPACRPAKGERMIRYHLLVLAKNWNGLQSIFRQLTLANQQMYYRPLLSID
QIFDFKDCVITSACLMGLTAHPNYADIIAKMQTVYGDDFYLEIHPHWIDGQFEANKRVVA
LHEMLGIKPVAANDAHYPNEEDTLTHDVLLAIQTNSKINEKGRFSFIDGGMAGLYLKTPQ
EMIYSFKPWIEAGYFSVEFLHKSFVSTQEIVDKCSGLEIPKLDFALPSLKRHKVENEAAF
LMQLCMDGWKAKIAGRGLDETVYVKRLKHELGVVSKIGAIRYFLLGWDVIDYAKSKSILC
GFGRGSAGGSLIAYLLGITALDPIVHELYFERFLREDRIDMPDIDFDFAGADRDQIIRYV
KKTYGAENVCQISTSSFMHGKSAFRDVARVFSIPIAQVNEISKKMDKDLSVEDNFSGGEL
AEFATANPILIKHAKRLDGQLRSKGVHAGGVILSQDGFSTRGVLEKRKSAVTVNWHMDEV
EHFGLLKFDFLGLSNLSVLGDTATLVKERTGVTIDYFSIQPNDPDVLKQFSDGHTAGFFQ
FESSGITGLCQKLAPIQSFETLVHSNTLYRPGPLDSGMVDSYVNRYHKLEAISYLHPAES
SITEETLGLPIFQEQVMRQFVDLAGFTWPEADQMRKIISKSKGAALLEEKRITFIEGCAK
TVGMTEAVANVIYDNIVKFGRYGFNRAHAACYSYIGYLTAWAKFYYPVEFITSLLRSVVD
ESETTEMYIKEAHRLGIKIEGPNINLSDSNWTAVGDRVIAGFASVKGVGKIAGQKIVAAR
SLGYFETFEDFMACTERRAVNKRVVEAIAYSGGFETLIPNTKWIVDNYPALVAGDPPAPL
AGYPDFDDPEKYSQKAEYAPGVFSSSTISITADMEIHDDILDMVTGEFITCKACDLGTKE
NAPVPWKWSSRSKVLIIGQFPNMAEETKGTPFTGKTYTKMWEILKAEAGLTPGKIFMAHA
FACRPPTGRLSREITDACTCPNLWLPKLFAACSPNVVLAFGNAGVAAFTGKSTGIMKLNA
TSIWHAKYRAMVVFSITPGMMAYDESGEKEEMFRQSIRKLKEYL
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgtttacacacctgcactgtcactgcagccacagcctgctcgatgggttgggtaatccc
gatgcctgggtcgaagctgctgccaagaaaaacttcaaagcgctggcgctcactgatcac
ggttcatgcagcgccgcactggaattttacaaagcagctaaggcagccggtatcatcccc
atcgtcggttgcgaattttatatcactgacgatcccgcttgccggccagccaaaggcgaa
cggatgatccgctaccaccttctggtactggccaaaaactggaatggtcttcaatccatt
ttccggcagctcacactggcgaatcaacagatgtattaccgcccactgctatcaatcgat
cagatcttcgatttcaaggactgcgtaatcacatcagcctgcctcatgggtctgaccgcc
catccaaactatgccgacatcatcgccaaaatgcagacggtttacggcgatgacttttat
ctggaaattcatccccattggatcgatggccagttcgaagccaataagcgagtcgtcgct
ctccatgagatgctcgggatcaaacccgtggctgcgaacgacgcccactatcccaatgaa
gaggataccctcacccacgacgtcctgttggccatccagactaattccaagatcaatgag
aaaggccggttcagcttcatcgacggcggcatggcaggcctgtatctgaaaaccccccag
gaaatgatttattccttcaaaccatggattgaagccggatacttcagcgtcgaattcctg
cataaatccttcgtttcaacgcaggagatcgtcgacaaatgctcggggctggagatcccg
aaactcgactttgccctcccatctcttaaacgccacaaggtcgaaaatgaggccgcattt
ctgatgcagctctgcatggatggttggaaggcaaagatcgccggccgcggcctggatgaa
acggtctacgttaaacgcctcaaacacgagctgggcgttgtatcgaagattggcgcgatc
cggtatttcctgctcggctgggacgtcatcgattatgccaagtcaaaatcgatcctttgc
ggattcggtcgtggttctgctggaggttccctgatcgcttacttgctcggaatcaccgcc
ttggaccccatcgtacacgaactgtattttgaacggttcctccgtgaagaccgcatcgat
atgcctgacatcgacttcgactttgccggcgccgaccgagaccagattatcagatacgtc
aagaaaacctacggcgccgaaaatgtctgtcagatcagcacctcttcattcatgcacggc
aaatcagcattcagggatgttgctcgtgtcttttccattcccatcgcccaggtcaatgaa
atctcgaaaaagatggataaggatctgtccgtggaggataactttagtggcggagaactc
gcagaatttgccaccgcgaatccaatcctcattaaacatgcaaaacgtctcgatggccag
ctccgctccaaaggcgtacatgccggtggcgtcatcctgtctcaagatggattcagcacc
cgaggtgttttggaaaaacgcaaatccgctgtgaccgtcaattggcacatggacgaagtc
gaacatttcggattgctcaaatttgactttctcggcttaagcaacctttctgtattgggc
gataccgccacgttggtcaaggaacgcacaggcgtcacgattgattatttttcaatccaa
cccaatgaccccgacgttttgaaacagttttccgatggacacaccgcaggttttttccag
tttgaatcgtccggcattaccgggctatgccaaaaactcgctccgatccagtcttttgaa
acgctcgttcacagcaacaccctgtatcgtcctgggccattagattccggcatggtggac
agctacgtcaaccgttatcacaaactggaagccatcagctacctgcacccggctgaatct
tccatcacagaggagaccttagggctccccatattccaagaacaggttatgcgtcaattt
gtcgatctggccggattcacctggccggaagccgaccaaatgcggaaaatcatcagcaag
tcgaagggcgccgccctgcttgaagaaaagcgcatcaccttcattgaaggctgtgccaag
acagttggcatgactgaggccgtcgccaatgtcatttatgacaatatcgtcaaattcggt
cgttacgggttcaaccgcgcgcacgccgcttgctattcgtacatcggatatctgactgcc
tgggcgaaattttattaccccgttgaattcataacttctctgctccgctcagttgtcgat
gagtcagagaccacggaaatgtatatcaaggaagcccatcgcctcggaatcaagatcgaa
ggcccgaatatcaatctatccgatagtaactggaccgctgttggcgaccgggttattgcc
ggatttgcctcggtcaaaggcgtcggtaaaattgccgggcagaagatcgtagccgcccgc
tcgttaggttatttcgaaacttttgaggacttcatggcttgcacagaaaggagggctgta
aataaacgggttgtcgaggccattgcctattctggcggattcgaaaccctcatcccaaac
accaaatggattgtcgacaattaccctgcattggtagccggtgacccaccagctccgctg
gccggttatccggactttgacgacccggaaaaatacagccaaaaagcagagtatgctccg
ggtgtattttccagctcaacgatttcgatcacggccgacatggagatccacgacgacatt
ctcgacatggtgaccggcgaattcatcacctgcaaggcttgcgaccttggcaccaaagaa
aacgctccggtgccctggaaatggtcatcgagaagcaaggttctgataatcggtcaattc
cccaacatggccgaggaaaccaaagggacgccattcaccgggaaaacctatacaaagatg
tgggagatcctgaaagccgaagccggactcacccccggcaagatcttcatggcccatgcc
ttcgcctgccggccacccacaggtcgactatcacgcgaaatcaccgatgcctgcacctgc
cctaatttatggctgcccaaattatttgccgcgtgttcaccgaacgtcgttctggctttc
ggcaatgccggggtggccgctttcaccggaaaaagcacaggcatcatgaaactaaacgca
acatccatttggcacgctaaataccgggccatggtcgttttttccatcaccccgggcatg
atggcgtatgacgaatcaggtgaaaaggaggaaatgttcaggcagtctattcggaaattg
aaagagtatctttga
DBGET
integrated database retrieval system
