Desulfosarcina variabilis: Dvar_42820
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Entry
Dvar_42820 CDS
T10869
Name
(GenBank) DnaE: DNA-directed DNA polymerase III, subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03030
DNA replication
dvr03430
Mismatch repair
dvr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dvar_42820
03430 Mismatch repair
Dvar_42820
03440 Homologous recombination
Dvar_42820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dvr03032
]
Dvar_42820
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_42820
Enzymes [BR:
dvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Dvar_42820
DNA replication proteins [BR:
dvr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Dvar_42820
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Dvar_42820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
CcmE
DUF3802
Motif
Other DBs
NCBI-ProteinID:
XPS86264
LinkDB
All DBs
Position
4806423..4809965
Genome browser
AA seq
1180 aa
AA seq
DB search
MTENASNFVHLHVHTQYSLLDGAIRLGDLFKRVKEFGMPAVALTDHGTMFGALDFYQQAV
AAEVKPIIGCECYVAPRTLADKTPQDKAGTRHLVLLAENQQGYQNLCKLATIGQLQGYYY
KPRIDKEVLAAHAEGLIALSACLKGDIPQHILDGHMDKAEAAAQFYLKTFGENNFFLELQ
HNGIPAQEKVNQGLVELSNRLSIPLVATNDCHYLNQQDAKAHEILLCVQTQKVITDSDRF
VFDSDQLYFKSPDEMRRTLGDYPGAIENTMAIAERCHIEFDFDTYHFPQFDAQSGKTADE
LFDDMVREGYARRMAVIREKNPDLDETVYRERLEYEVKTIKDMGFPGYFLIVADFIRYAK
ENGVPVGPGRGSAAGSLVSFALFITDLDPIEHGLIFERFLNPSRISMPDIDVDFCIHGRE
RVYNYVVERYGGGDYVAQIITFGKMKAKLVIRDVGRALGLPLAEVDTIAKLIPDSLKMTI
EKALKEEPKLAEMVEADPRIAELIDISRALEGLSRHASTHAAGVVIGDKPLVEYLPLYKG
KKGEVVTQFDMKKVEDIGLVKFDFLGLRNLTVIDNALKSIEAQGKTVPDLDHLPFDDEKT
FALLQAGDTTGVFQLESSGMKNLLVRLHPESFADMTALVALYRPGPLDSGMVDDFVDRKH
GRKEVVYPVESLAPILEETYGVIVYQEQVMQVAGELSGYTMADADSLRKAIGKKIEALMA
KHREKFISGAVKNGVDEKVATDLFDLIEKFGGYGFNKSHSAAYALIAYQTAYLKAHFPVE
FMAALLTSEIDTIDGVVKFINECRSHGIEVLPPDVNESSTFFTAVDDRIRFGMAAVKNVG
EAAVDLIIKEREENGSFSSIFDFCQRVDLNKVNKRVLESLIRCGAFDSTGVYRSRLMAVL
EEALDYGQRIQREKNSAQMSLFDMGGNDSVTINLPAIPAIAEWDDREKLQQEKETLGFYV
TGHPLDCFKDTMEKFTNVNALTIKEIEDKCAVRIGGAISSSKVIRTKKEELMGFATVEDL
NGSVEVVVFPSVYSSCADLLVEDTAVLVQGTAQVEDNGVKILADAIIPMEKAEETWAVEV
RLMVDSKKTDRDTLQRVQQTLKRYPGACKGFIHICLDGQAEAVISMTEDLRIRYCDAMTR
EINGILGYAGVESRCSDAASAMRTSDLDSRRKNGRQFARG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaacgcttccaattttgtccatctgcatgtccatacccagtatagccttctg
gacggggccatccggctgggtgatctgttcaagagagtcaaggaatttggtatgccggcg
gtggccctgaccgaccatggcaccatgttcggcgccctggatttctatcagcaggccgtg
gctgcagaagtcaagccgatcatcggctgcgagtgttatgtagccccccgcaccctggct
gacaagacgcctcaggacaaagcgggaacccgtcacctggtattgctggccgaaaatcag
cagggctaccagaatctgtgcaaattggcgaccattggtcagttgcagggctactactac
aagccgcgtatcgacaaagaagtattggccgcccatgccgaagggctcatcgccctgtcc
gcctgtttaaaaggggacatccctcagcacattctggacggacatatggacaaggccgag
gcagccgcgcagttttacctgaagaccttcggcgagaacaactttttcctggaactgcag
cacaacggcatcccggcccaggaaaaggtcaatcaaggactggtcgaattgtccaaccgg
ctttccattcccctggtggccaccaatgactgtcactatctcaatcagcaggacgccaag
gcccatgaaatcctgctttgcgtccagacccagaaagtgattaccgacagcgatcgcttc
gtcttcgactcggaccagctctacttcaagtcaccggacgagatgcggcgaaccctgggt
gattatccgggggccattgaaaatacaatggccatcgccgagcgatgtcatatcgaattt
gatttcgacacctaccattttccccagtttgatgcccagtcaggcaaaaccgccgatgag
ctctttgacgacatggtgcgtgaggggtacgcgcgtcgcatggccgtcatccgtgaaaag
aaccctgatttggatgaaacggtttaccgtgagcggctcgagtatgaagtcaagaccatc
aaggacatgggctttcccggttattttctgatcgttgccgattttatccgctatgccaag
gaaaacggtgtcccggtgggacccggtcgtgggtcggctgccggcagcctggtttccttc
gccttgtttatcaccgacctggaccccatcgagcacggattgattttcgaacgctttctt
aacccgtcacgtatcagcatgccggatatcgacgtggatttttgcattcacggccgtgaa
cgggtgtacaattacgttgtcgaacgctacggcggcggtgattatgtggcccagatcatc
accttcggcaagatgaaagccaaactggtgattcgggacgtgggccgggccttgggattg
cccctggccgaggtggacaccatcgccaaattgatccccgacagcctcaagatgaccatt
gaaaaggccctgaaggaagaacccaaactggccgagatggtcgaggccgatccgcgcatc
gccgaattgatcgacatcagccgggccctggaggggctttcccggcatgcctccacccat
gcggccggggtggtcatcggcgacaaacccctggtcgagtatcttcctttatacaaaggc
aaaaagggggaggttgtcacccagttcgacatgaagaaagttgaggatatcggactggtt
aaattcgattttctggggctgcgcaacctgaccgtcatcgacaatgccctaaagagtatc
gaggctcagggaaaaaccgttcccgatctggaccatctgccctttgacgatgaaaagacc
tttgccctgctccaggccggtgataccaccggcgtattccagctggagtccagcgggatg
aagaatctgctggtgcggctgcatccggaatcctttgcggacatgactgccctggtggcc
ctctaccgaccgggcccgctggacagcggtatggtcgacgattttgtggatcgcaagcac
gggcgcaaggaagtggtctacccggttgagtccctggcgccgattctggaggaaacctac
ggcgtaatcgtttatcaggagcaggtcatgcaggtggccggtgagttgtccggttatacc
atggccgatgcggacagtttacgcaaagccatcggtaagaagatcgaggcgctgatggcc
aagcaccgcgagaaatttatcagcggcgcggtgaaaaacggggtggatgaaaaggttgcc
acggatctgtttgatctgatcgagaagtttggtggatatggattcaacaaatcccacagc
gccgcctatgccctgattgcctaccagaccgcctatctcaaggcccattttcccgttgag
ttcatggccgctctgttgaccagcgagatcgacaccatcgacggcgtggtcaagtttatc
aatgaatgccgcagccacggcatcgaagtgctgccgccggatgtcaacgaaagctccacc
ttttttaccgccgtggacgaccgcatccggtttggcatggcagccgttaaaaatgtgggc
gaagcggccgtggacctgatcatcaaggagcgggaggaaaacggctcgttttcgtctatt
tttgatttttgtcagcgcgtggatctgaacaaggtcaacaagcgcgtgctggaaagcctc
atccgctgcggggcctttgattccaccggtgtgtatcgttcccgcctcatggcggtgctc
gaagaggccctggactatggccaacggatccagcgagaaaaaaacagcgcccagatgagt
ctgtttgatatgggcggaaacgattcggtgacaatcaatctaccggccattcccgccatc
gccgaatgggatgatcgcgagaaattgcagcaggaaaaggaaaccctcggattctacgtt
accggccatcccttggactgcttcaaggacacaatggaaaagttcaccaatgtgaatgcc
ttgaccatcaaggaaatcgaggataaatgcgccgttcggatcggcggtgcgatcagcagc
agcaaggtgatccggacgaaaaaagaagaactcatgggctttgccacggtcgaagacttg
aacggcagtgtcgaagtcgttgtttttccatcggtttattccagctgcgccgatctgctt
gtagaagatacggccgtattggttcaaggcacggcccaggtcgaagacaatggggtgaaa
atactggccgatgcgatcattcccatggaaaaggccgaggaaacctgggccgtggaagta
cggttgatggtcgactccaaaaaaaccgatcgagacaccttgcaacgtgttcaacagacc
cttaaacgctaccccggcgcctgcaaagggtttatccatatctgtctggacggtcaggcc
gaggccgttatttccatgaccgaggacctgcgcatccgttactgtgatgccatgacccgt
gagatcaatggcattttaggatatgccggcgtggagtcccgttgcagcgatgcggccagc
gccatgcgcaccagtgatctggacagccggcgcaaaaatggccggcagtttgccagagga
tag
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