Desulfosarcina variabilis: Dvar_42890
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Entry
Dvar_42890 CDS
T10869
Name
(GenBank) Rnz1: predicted ribonuclease Z (tRNA 3 endonuclease)
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
dvr Desulfosarcina variabilis
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvr03016
]
Dvar_42890
Enzymes [BR:
dvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
Dvar_42890
Transfer RNA biogenesis [BR:
dvr03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
Dvar_42890
Prokaryotic type
Dvar_42890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
XPS86271
LinkDB
All DBs
Position
complement(4815560..4816576)
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AA seq
338 aa
AA seq
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MGSRFLPRLVNGPFDDPALFVPFRYQNRALLFDAGDISALSARDILKISHIFITHTHMDH
FIGFDHVLRLLLGRDKDLYVFGPQGFLSNMAGKLAGYCWNLVKNYRNRFTLHVTELHPNH
RLYGCFPCHKGFSARGEIRQQPFDGTVVSDPELMVRAVHLDHGTPVLAFSLEERFHVNII
KESLDAMGLCPGPWLTRFKALIYDGADSDTVIDIPSAAVGKPLIRLPLGKLQSTIARIRP
GQRIAYIADTAATPDNIQKIIALASGADMLFVEAAFSHSDHEIALEKHHLTARQAGELAR
ACKARQYHLFHYSPRYTDCPQLLENEAQAAFTGQENGS
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgggatcacgttttttaccccgactggtcaacggtcccttcgatgatccggctcttttt
gtccccttccgttaccaaaaccgggcgctgctttttgatgcgggtgatatcagcgccttg
tcggctcgagatattctcaagatttcccacatttttattacccacacgcacatggatcat
ttcattggattcgatcacgtgctgcgtcttttgcttggccgggacaaggacctttacgtt
ttcggcccacagggctttttgtcgaatatggccgggaaactagccggttattgctggaat
ctggtgaaaaactatcgcaaccgctttaccctgcatgtgaccgaactgcatcccaatcac
cgtttatacggctgtttcccttgccacaagggtttttcagcccgcggggaaatccggcag
cagccgtttgacgggaccgtggtgagtgatccggaactgatggtacgggccgttcatctc
gatcacggcacaccggtcttggccttttctctggaagaacgctttcacgtcaacattatc
aaggaaagcctggatgccatggggctttgccccggcccgtggctgacccgcttcaaggcc
ctgatttacgatggtgccgattcagacaccgtgatcgacattccatccgcagcggtggga
aaaccgttgatccgcctgcctctgggaaaactgcaatccaccattgcgcgcatccgcccc
ggacagcgcatcgcctatattgccgatacggccgcaacgcctgacaacatccaaaaaatc
atcgccctggcaagtggtgcggacatgttgttcgtagaagccgctttttctcattcagat
cacgagatcgcccttgaaaagcatcacctcaccgcccgccaggccggagaactggcccgt
gcctgcaaagcgaggcagtatcacctgtttcactactcaccccgctatacggattgtccg
cagctgctggaaaatgaggctcaggccgcgtttaccggtcaggagaatggttcttaa
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