Desulfosarcina variabilis: Dvar_44080
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Entry
Dvar_44080 CDS
T10869
Name
(GenBank) XseA: exodeoxyribonuclease VII, large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Dvar_44080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvr03400
]
Dvar_44080
Enzymes [BR:
dvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
Dvar_44080
DNA repair and recombination proteins [BR:
dvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Dvar_44080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
RecJ_OB
RecA-like_ORC2
Cyanophycin_syn
Motif
Other DBs
NCBI-ProteinID:
XPS86390
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All DBs
Position
4946650..4948020
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AA seq
456 aa
AA seq
DB search
MTFRDTPGQQARQHIFQVSELNGQIKRLLEEKFPFIWISGEISNFKTPSSGHCYFTLKDQ
SSQVSAVIFRVQAQALKFRPEDGMSIVGLGRVSVYEPRGSYQVIFEYMEPQGVGALQIAF
EKLKQKLSDEGLFDERHKKEIPFLPHKISIVTSPTGAAIRDFINVAQRRFPNLALEVVPV
AVQGVRSPGEIINAIALLNQIGTTDVIVLARGGGSIEDLCAFNDEALARALFASRIPIVS
AIGHETDFTIADFVADLRAPTPSAAAEITVPLKSELQEQILFIKQKLYKNINYNLILLKK
NIDSISLRIVHPKRRLQDLRLGIDDFTARISLLIREALARNKERVDYRYRALIQASPAKT
VHYEKARIMTLYQALNGQMDRILKKAHDDLARHTDMLEALNPLAILKRGYSITRSVPQRT
IVRNARQVKIGQSLEIVLGRGQLTVSVEDKQSDAYK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgacattcagagacacccccggacagcaagcacggcaacatatttttcaagttagtgag
ctcaatggccaaatcaagcgcttgcttgaagaaaagtttccgttcatctggatatccggc
gaaatttcgaatttcaaaacaccgtcgtcaggccattgttacttcacgttaaaagaccaa
tccagtcaagtcagtgcggtaatctttcgtgtccaggcccaggcattaaaattcaggcct
gaagacgggatgtcgatcgttggtcttggacgcgtcagtgtgtatgagccccggggcagc
taccaggttatctttgagtacatggagccccaaggtgtgggtgcgcttcaaatcgccttt
gaaaaactcaaacaaaaactttccgatgaaggactttttgacgagcggcacaaaaaagaa
attcctttcttgccgcacaaaataagcatcgtcacttcgccgactggtgcagccatccgc
gatttcatcaacgtggcccagcggcgctttcccaatttagcgcttgaagtggttccggtt
gcggtccaaggcgtccgatcgccaggcgaaataattaatgccattgcgctgctaaaccaa
atcggcaccaccgatgtgattgttctggcgcgtggcggtggatccatagaagatctttgt
gcatttaacgacgaggcacttgccagagccctgttcgcctcccggattccgattgtttcc
gcaatcgggcatgaaacggattttaccatcgccgattttgttgccgatctacgggccccc
accccatctgcagcagcggaaataacggttcctttgaaaagtgagctacaagaacagatc
ttatttattaaacaaaaactttataaaaatattaattacaatctgatattattaaaaaaa
aatatcgattcaatctcacttcgaatcgttcaccccaaacgcaggctgcaagatctgcgt
ttggggattgatgattttacggcgcgtattagcctattgatccgtgaagcattggcgcgt
aataaggaacgggtggattatcgttatcgggcgctcattcaggcatcaccggcaaaaacg
gtgcattatgaaaaagcgcgtatcatgaccctgtatcaggcattgaacggccaaatggac
cggattctcaaaaaagcgcatgatgatttggcacgtcatacggacatgcttgaggctttg
aatccgctggccattttgaaacgtgggtatagtattacccggtctgtgccccagcgaacc
attgtgcgcaatgcccgtcaggtaaaaatcggccaatcccttgaaatcgtgctggggcgc
ggccaattgacagtcagcgtcgaagacaagcaatcagatgcatataaataa
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