Desulfosarcina variabilis: Dvar_59070
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Entry
Dvar_59070 CDS
T10869
Name
(GenBank) Rho: transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvar_59070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvr03021
]
Dvar_59070
03019 Messenger RNA biogenesis [BR:
dvr03019
]
Dvar_59070
Transcription machinery [BR:
dvr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Dvar_59070
Messenger RNA biogenesis [BR:
dvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dvar_59070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
NACHT
S1CSD-TOTE-2
OB_RNB
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
XPS87889
LinkDB
All DBs
Position
complement(6590117..6591364)
Genome browser
AA seq
415 aa
AA seq
DB search
MNIVELKNKKINELNKMAKQLNIDGAAGMRKQELIFSLLQAQIEKNGLIFGEGTLEILPD
GFGFLRAPNYNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRQPKESERYFALLKVEAVN
YEDPEVAREKILFDNLIPLYPDHKVNLETDPENYSARIMDLLTPIGFGQRGLIVSPPRSG
KTMLLQCIANCIVKNHKDIVLFVLLIDERPEEVTDMQRSVKGEVISSTFDEPAERHVQVA
EMVIEKAKRLVEHKKNVVILLDSITRLARAYNSVMPPSGKILSGGVDSNALQRPKRFFGA
ARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIQLDRRLADKRIFPAIDIKKS
GTRKEELLLDEATLNRVWILRKLFSSLNPSDSLEFLLEKMNGTKDNADFLESMNA
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgtcgaactgaagaacaaaaagatcaatgaactgaataagatggcaaaacaa
ctcaatatcgatggggctgctggcatgcgcaagcaggagctgatcttttctctgctccag
gcccagattgaaaaaaatgggttgattttcggggaagggaccttggaaattcttccagac
ggtttcggatttcttagagcgccgaactacaactatctgcctggacccgatgacatctac
gtgtcaccctcacagatccggcgtttcaacctgcgtaccggcgatacggtatccggccag
atccgccagcccaaggaatctgaacgctattttgccttgcttaaagtggaagcggtcaac
tacgaagacccggaagtggcccgggagaagatcctttttgacaacctgatcccattgtac
ccggaccacaaggtcaatctggaaactgatccggaaaattattccgcccgcattatggac
ctgttgacaccgattggtttcggccagcgcggattgattgtgagtccgcctcggtcaggc
aagaccatgctgttgcagtgcattgccaactgtatcgtaaaaaatcacaaggatattgta
ctgtttgtgctgctgattgatgaacgcccggaagaggtcacggacatgcagcgctcggtc
aaaggcgaggtgatcagttcgacctttgacgaacccgcagaacggcatgtccaggtggcg
gaaatggtgattgaaaaagccaagcgtctggtcgagcacaaaaaaaacgtcgtcattttg
ttggacagtattacgcgtctggcccgggcctacaactcagttatgccgcccagcggtaaa
attctgtccggtggtgtggactccaatgcgttgcagcggcctaaacgcttctttggcgcg
gcccggaacatcgaagagggcggcagcctgaccattatcgccacggccctggtagacacc
ggttcccgcatggatgaggttattttcgaagaattcaagggtaccggcaatatggaaatt
cagctggatcgccgccttgccgacaaacgcatcttcccggccattgatatcaagaaatcc
ggtacccgcaaggaggaattgctgctagacgaagccaccttgaatcgggtatggatcctc
agaaaactgttttcgtccttaaatccgtctgatagccttgaatttttacttgaaaaaatg
aacggaacaaaggataatgcagatttcttggagtcaatgaacgcttaa
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