Desulfosarcina variabilis: Dvar_61290
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Entry
Dvar_61290 CDS
T10869
Name
(GenBank) GroL: 60kDa chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
dvr Desulfosarcina variabilis
Pathway
dvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvar_61290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvr03019
]
Dvar_61290
03110 Chaperones and folding catalysts [BR:
dvr03110
]
Dvar_61290
03029 Mitochondrial biogenesis [BR:
dvr03029
]
Dvar_61290
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dvr04147
]
Dvar_61290
Enzymes [BR:
dvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Dvar_61290
Messenger RNA biogenesis [BR:
dvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Dvar_61290
Chaperones and folding catalysts [BR:
dvr03110
]
Heat shock proteins
HSP60 / Chaperonin
Dvar_61290
Mitochondrial biogenesis [BR:
dvr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Dvar_61290
Exosome [BR:
dvr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Dvar_61290
Exosomal proteins of other body fluids (saliva and urine)
Dvar_61290
Exosomal proteins of breast cancer cells
Dvar_61290
Exosomal proteins of colorectal cancer cells
Dvar_61290
Exosomal proteins of bladder cancer cells
Dvar_61290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
divDNAB
SurA_N
Motif
Other DBs
NCBI-ProteinID:
XPS88111
LinkDB
All DBs
Position
6844979..6846640
Genome browser
AA seq
553 aa
AA seq
DB search
MAGKVIKYDMKAREAMLNGVKALADAVVVTLGPKGRNVVIDKSWGSPTVTKDGVTVAKEI
ELEDKFENMGAQMVKEVASKTSDMAGDGTTTATVLARAIYEEGQKMVAAGNNPMSIKRGI
DKAVETAVKELHKMSKPTKDQREIAQVGTISANNDETIGNIIAEAMNKVGKEGVITVEEA
KGMETTLDVVEGMQFDRGYLSPYFVTDPEKMVASLEDPYILINEKKVSNMKDLLPVLEQV
AKMGKPLVIIAEDVDGEALATLVVNKLRGTLQVAAVKAPGFGDRRKAMLEDIAILTGGQV
VSEDLGIKLENLTITDLGQAKRITIDKDNTTIVDGAGARSALEGRVKQIRAQIEETTSDY
DREKLQERLAKLIGGVAVINVGAATETEMKEKKARVEDALNATRAAVEEGIVPGGGVALV
RTLPALDKIKIKADQKLGVKVVMRAIEEPLRRIASNAGYEGSVVIDKVKNAEDAMGYNAA
TNEYEDLIEAGVIDPTKVVRFALQNAGSVASLMLTTEAMIAEKPDDKAADPMAGAGAGGM
GGMGGMGGMGGMM
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggctggtaaagtaattaagtatgatatgaaagcccgcgaagcgatgctcaatggcgtt
aaggcgcttgccgatgcagtggttgttaccttaggacctaaaggaagaaatgtggtcatc
gacaagtcctggggctctccgacggtgaccaaagatggtgtaaccgttgccaaggaaatt
gagctggaagacaagttcgaaaacatgggcgctcagatggtcaaagaagttgccagtaaa
accagtgatatggctggtgatggcaccacgacggcgactgtcctggcacgtgccatttat
gaagaaggccagaaaatggttgccgccggtaacaatcccatgtccatcaagcgtggtatt
gataaggccgtcgagactgccgttaaagaactgcacaaaatgagcaaacccaccaaagat
caacgcgagatcgcccaggtcggtaccatttccgccaacaacgacgagaccataggcaac
attatcgccgaagccatgaataaggtcggtaaagaaggcgtaatcaccgttgaagaagcc
aaaggcatggaaaccactctggacgtggttgagggtatgcagttcgatcgcggttacctt
tctccctacttcgtgaccgatcccgaaaaaatggtcgcctctttggaggatccatacatc
cttatcaatgagaaaaaagtcagtaacatgaaagatctgctgccggttctcgagcaagtg
gccaagatgggcaagcccctggtcattattgcagaagacgtcgacggtgaagcgctggcc
accttggtcgtcaataaactgcgcggcaccctgcaggtggcggctgtcaaggcgccgggt
tttggtgatcgcagaaaagcaatgctcgaagatatcgccattcttaccggcggccaggtt
gtatccgaagatctgggtatcaaattggagaaccttaccatcaccgaccttggccaggcc
aaacggataacgattgacaaagacaacaccacaatcgtcgatggcgcgggtgcccgttcc
gctctggaaggtcgggtgaaacagattcgggctcagatcgaagagaccacctctgactac
gatcgtgaaaaactccaggaacgtctggccaaactgatcggtggcgttgctgtgatcaac
gttggtgcagcgactgaaaccgaaatgaaagagaaaaaggcccgtgttgaagacgcactc
aacgcaacccgcgctgccgttgaagaaggcatcgttcctggcggtggcgttgccctggta
cgcacccttcccgcattggataaaatcaaaatcaaagccgatcagaaactgggtgtcaag
gttgtgatgcgcgccatcgaagagcccctgcgccggatcgcctccaacgccggttacgaa
ggcagcgtcgttatcgacaaagtcaaaaatgccgaagacgccatgggctacaacgcagcc
accaatgaatatgaagacctgattgaagccggtgtgatcgaccccacaaaggtggttcgc
tttgcccttcagaatgccggcagtgttgcctcgttgatgctcaccacggaagccatgatt
gcagaaaaaccggatgacaaggccgctgacccgatggctggcgctggtgccggtggcatg
ggtggcatgggtggtatgggtggcatgggtggcatgatgtaa
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