Desulfosarcina variabilis: Dvar_79600
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Entry
Dvar_79600 CDS
T10869
Name
(GenBank) RtcB: tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dvr Desulfosarcina variabilis
Brite
KEGG Orthology (KO) [BR:
dvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvr03016
]
Dvar_79600
Enzymes [BR:
dvr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Dvar_79600
Transfer RNA biogenesis [BR:
dvr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Dvar_79600
Prokaryotic type
tRNA splicing ligases
Dvar_79600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XPS89941
LinkDB
All DBs
Position
8941880..8943313
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AA seq
477 aa
AA seq
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MELTPLNPYCYEIPRTGDMRVPGRIFMSRRMVANLTEAEALKQVANVATLPGILTAAMAM
PDMHWGYGFPIGGVAAFDWNTGIISPGGVGYDINCGVRLAGTGLTEKEVRPVADRLVEAL
FQNIPTGVGSTGSVKLSAKEEMKVLRQGGRWAVRQGMGEPSDVERTEDGGCMTEADPTTI
SQRALERGAKQLGTLGSGNHFLEVGVVDEIFDEDIARAFGLFDGQITVLLHTGSRGLGYQ
VCDDSLAFMNKHVKTLGIRLPDRQLACAMIRSAAGERYFSAMACAANYAWANRQILLHRA
RETFMQVLGIGPRDLAMRQVYDICHNIAKRETHTVDGKPQTVCVHRKGATRAFAPGHPAI
CDAYRSVGQPILIPGDMGTASYVLAGTQRAMEESFGSTCHGAGRVLSRKAAKKKSRGRAI
HRELAEKGILVKWTGRSTLAEEMPDAYKDIDQVVESVHGAGISKKVARLRPICVIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggaacttacgcctttgaatccgtattgctatgaaatcccccgcaccggcgacatgcgc
gtgcccggccgcattttcatgagccgccggatggtcgccaatcttaccgaggcggaggcc
ctcaaacaggtggccaacgtggctaccctgcccggcatcctcaccgcggccatggccatg
cccgacatgcactggggctatgggttccccatcggcggggtggcggcttttgactggaac
accggcattatttctcccggcggcgtcgggtatgacatcaactgcggtgtgcgcctggct
ggaaccggtcttacggaaaaagaagttcggcctgtggccgaccgtctggtggaagccctg
ttccagaacatccccaccggggtgggatccaccgggtcggtcaaactgtccgccaaggaa
gaaatgaaggtactcaggcagggtggacgctgggccgtacgacaaggcatgggcgagccg
tcggatgtggagcgcaccgaagacggtgggtgcatgacagaagccgacccaacgacgatc
agccagcgcgccctggagcggggagccaaacaattgggcaccctgggatcgggcaatcac
tttttggaagtgggcgtggtggacgagatttttgacgaggacatcgctcgtgcctttggt
ctgttcgatggccagatcacggtcctgctgcataccggatcacggggcctgggctaccag
gtctgcgatgattccctggccttcatgaacaagcatgtcaaaaccctgggaatccggttg
cccgaccgccaattggcctgcgccatgatccgcagcgcggcaggcgaacgctatttcagc
gcaatggcctgcgcggcgaactatgcctgggccaaccgccagattctactgcaccgcgcc
cgggaaaccttcatgcaggtgctgggcatcggaccacgggatctggccatgcgtcaggtg
tacgacatctgccacaacatcgccaaacgggaaacccacacggtggacggcaaaccgcaa
accgtttgcgtacaccgcaaaggcgccacccgggcctttgcccccggccacccggcaatc
tgcgatgcctatcggtccgtcggccagccgatcctgattcccggtgacatgggtaccgcc
tcctatgtactggccggcacccagcgggccatggaggaaagctttggctccacctgccac
ggcgccggacgggtgctgagccgcaaggccgccaagaaaaaaagccgtgggcgcgccatc
caccgcgaactggccgaaaaaggcatcttggtcaaatggaccggtcgcagcaccctggcc
gaagaaatgcccgacgcctacaaggacatcgaccaggtggtggaaagtgtgcatggggcc
ggcatctcaaaaaaagtggcacggctcaggcccatctgcgtcatcaaaggataa
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