| Entry |
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| Name |
(GenBank) DeaD: cold-shock DEAD box protein
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| KO |
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| Organism |
dvr Desulfosarcina variabilis
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:dvr00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvar_80510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:dvr03019]
Dvar_80510
03009 Ribosome biogenesis [BR:dvr03009]
Dvar_80510
Enzymes [BR:dvr01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dvar_80510
Messenger RNA biogenesis [BR:dvr03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dvar_80510
Ribosome biogenesis [BR:dvr03009]
Prokaryotic type
rRNA helicases
Dvar_80510
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(9043624..9045357)
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| AA seq |
577 aa
MTFDELGLNPKLLKAVHSLGFTTPTPIQQAAIPDLLEGRSDLVGLAQTGTGKTAAFGLPI
LQLIDPRKAMAQGVVICPTRELCVQITADLKRLACYLKPLEIVPVYGGAGMANQIRQIKR
GAQLIVATPGRLLDLMHRGVVPTSQIRFVVLDEADEMFTMGFQEDIDEILKQTPDTRRTW
LFSATMPAAAERIAKTYMHDPIELSMGQRNMGAENIEHIYYVVKEKDRYIALKRLIDFEP
DIYGLVFCRTRAETRTVAEKLSQEGYNAEALHGDLSQDQRNRVMRGFRDRTLHILVATDV
AARGIDVEDISHVIHYNLPDDTERYTHRSGRTARAGKSGFSLMLVNSREVHRLPEIEHRA
GVRLKRGEIPQGRDICEKQLLAIVKKMAAVEVKHSDIADYLPLVHKALGNFCKEELIQRF
VSVEFNRFLNDYRDSSDLNVRTVKSKKSAWKSPEKADKNVQRFFINIGRLDNINEGAIVR
WVCDKTGIRSKKIGQINLKREFSFFDVDKQVASKVLHGLKNTKLENRSVSIKPVENSPIE
SRRSYGKSISKKHSSRSNRRHRAQKRPAYRCADPRRG |
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| NT seq |
1734 nt +upstreamnt +downstreamnt
atgacattcgatgagctggggctaaatcccaaacttttaaaggccgtccattcgttggga
tttacaacccctacacccatacaacaagccgccattccggatcttttggaaggccggtcc
gacctggtggggctggcccagacaggaaccggtaaaacagccgcctttggcctgccgata
ctgcagttgatagatcccagaaaggccatggcgcaaggggtggtgatctgcccgacccgt
gaactctgcgtccagatcacagcggatttgaaacgtctggcatgctatctgaagccattg
gaaattgtacccgtttatggcggggccggcatggcgaaccagatccgccagataaagcgc
ggggcgcaactcattgtggccacccccggcaggctgctcgacctgatgcatcgcggcgtt
gtccccacgtcacagatcagatttgtggtgctggatgaagccgatgaaatgtttaccatg
gggtttcaggaggatatcgacgagatccttaagcagacacccgacacccgccggacctgg
cttttttcagccaccatgccggctgcggccgagcggattgcaaagacctacatgcatgat
ccgattgaattgtccatggggcaacgcaacatgggggctgaaaatatcgagcacatctat
tatgtcgtcaaggaaaaagacagatatatcgccttgaagcggctgatcgatttcgaaccc
gacatctatgggctcgttttttgccgtacccgcgcggaaacgcgaactgtagcggaaaaa
ctttcccaggagggctataatgccgaggccctgcacggtgacctgtcgcaagatcagcga
aaccgggtcatgcgtgggttccgagatcgcaccttgcatattctggtcgctaccgatgtg
gctgccaggggcatagatgtggaagatatctcccatgtcatccactacaatcttccggat
gataccgaacgctatacccatcgcagcggtcgcacggccagggccggaaaatcgggattt
tcccttatgttggtcaattcccgtgaagtccatcgcctgcctgaaatagaacatcgggcg
ggtgtgcgattgaaaaggggagaaatcccccaaggccgtgatatctgcgaaaaacaactt
ctggcaatcgttaaaaagatggccgctgttgaggtcaagcacagcgatatcgcagattat
cttccgcttgtgcataaggcattgggaaacttttgcaaagaagaattgatccagcgtttt
gtttcggtggaattcaatcgcttcctgaatgactaccgcgacagcagtgatttgaatgtt
cgtacggtcaagtcgaagaaaagtgcctggaagtcgcctgaaaaagcggataaaaacgtt
cagcgctttttcatcaatattggccgcctggacaatatcaacgagggtgcgattgtacgc
tgggtatgcgataagaccggcattcggtcgaaaaaaatcgggcagatcaatctgaaacgg
gaattttctttttttgatgtggataagcaggtcgccagcaaagtgctgcatggcctgaaa
aacacgaaattggaaaatcgcagcgtcagcataaaaccggttgaaaattcccccatagaa
agcaggcgatcttatggaaaatcaatatcgaaaaaacattcatcccggtcaaaccgtcga
catcgtgctcaaaaaagaccagcgtaccggtgcgctgacccgcggcgtggttaa |
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