Daktulosphaira vitifoliae (grape phylloxera): 126895876
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Entry
126895876 CDS
T09738
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dvt03041
]
126895876
Enzymes [BR:
dvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126895876
Spliceosome [BR:
dvt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
126895876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
R3H
AAA_19
ResIII
HA2_N
nSTAND3
Ank_2
Motif
Other DBs
NCBI-GeneID:
126895876
NCBI-ProteinID:
XP_050524123
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MIFKSPNNLSQDSKDYLSHELHKFMLSDILEYTFSTSLSSEERKYLHMKCADFGLKSKSH
GKGNNRSITVYMNKTNIDNKAGNIAISPISKEIVTKICHSVPLTKEMYIELLPNPIKPFQ
RMAVANCKRNLPLMCNKPMTIPHLSANEELLALRKSLPIWEKRGQIIQEIENNPVVIITA
ETGSGKTTQIPQFIIDSSAIKNKPCRVICCQPRRIAAISMADRVSNERGENIGMSTGYQV
RLESCVSHETTIIYCTTGVLTRTLMDRQQKDNEPIKGMLMNVSHIIVDEVHERDKHVDFL
LIALRMILPKFPHLKLVLMSATADIKLFSTYFNNCPVLKVEGKIFPVRDFFLEDILDIMK
YESPSMLRVKNKTKIDYWDNDVALNATTEAIQNMHVVEPVKILKPDQEWLKPELDDCMHQ
IWFNAEVEQIDRMIYYIMSEGVPVDYQHSDTGVTLLMLVAVHGLNDYVLTLLNMGANPVI
TTRVLNKDAATWAADFKQYETRDLILNYKGSTTTKEQNEESREFQVMDRLELYKKSLSPN
IIIDSYLISHLIKYIILNKKSGSILVFLPGFEDMSMVNKVITEELIAKDDLKIKIYMLHS
MMQTSDQQRVFLPVPKGYQKVILATNIVETSVTINDIVYVIDSGRVKQKGYNAFNGISCM
NVNWISQSCAKQRAGRAGRLCAGECYRLYSRDHYSFMGTHDIPEILRMPLQELCMLAKVI
TNNMRVMDFLALAIQPPPTLSVIAALEYLKTIEAMDINEDLTDLGFFMLDLSIEPHYAKT
LVFAIFLKCLDPVLTIISCLANREPFNLTLNVNMKTSLGSIRKKLAGDSLSDHIILLRLY
QAFNEKSMVGSELNNLVSQSIMGLITQTRTQLLGQLRALELIQTRPGPNDIRDVNSNSNN
WAAVKACLLAGLYPNIAKLDKTSSRPILKTKTEKSVVYHGSSVLRENCVKDLPSEWIVFE
EMTSFNTKKFIKNCTVVSPMTVALFANAMRIPHDSAEKIEDDSDCDSDEEFVTPSDKLGI
LNVDGWTKLLGSPDDISKILNMRFCLTLAYREFLKNKMITNYSSYNSVVQSVVKVLAAED
LMVGLEAPDDVGKRPKENSNKGRHGRYSNENPSFTSFRKITQGQHLLSKNYVDTGSFSSG
RNHYIAGIRGSSSYRSQNNHSSPSTSHHLNNNFKCQQ
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgatttttaagtcacctaataacttgtctcaggattccaaagattacctttcccatgaa
ttacataaatttatgttgtctgatatcctagagtacacattttcaacttcattatcatca
gaagagcgcaaatatttacatatgaagtgtgctgattttggattaaaatctaaaagtcat
gggaaaggtaataatcgttccataactgtttacatgaataaaacaaatattgataataaa
gctggaaatatcgcaatttcaccaatatctaaagaaatagtaaccaaaatttgtcacagt
gttcctcttacaaaagaaatgtatattgaattattaccaaatcctataaaaccatttcaa
aggatggctgtggccaactgtaaaagaaatctacctttaatgtgtaataagccaatgact
atccctcacttgtcagctaatgaagaattgttagctttaagaaaatctttacctatatgg
gaaaaacgaggacaaataattcaagaaattgaaaacaatccagttgtgataataacagca
gaaactggatctgggaaaacaactcagataccacaatttattatagatagcagcgcaata
aaaaataaaccatgtcgtgtaatatgttgtcaacctaggagaatagcagctatctcaatg
gctgacagagtgtccaatgaaagaggtgaaaatattggaatgagtactgggtatcaagtt
cgactggaaagctgtgtaagccatgaaaccactataatatattgtacaactggtgttttg
acaagaacacttatggatcgtcaacaaaaagataatgaacctatcaaaggaatgcttatg
aatgtatctcatataatagtagatgaagttcatgaacgtgataagcatgtagatttctta
ttgatagcattgcgaatgatattacctaaatttccacatcttaaattagttttaatgtct
gctactgcagatataaaattattttcgacttattttaataattgtccagtgttaaaagta
gaaggaaaaatttttccagtacgagatttttttttagaagacatattggatattatgaaa
tatgaatcaccatctatgttacgtgttaaaaataagacaaaaattgattactgggataat
gatgtagctctcaatgcaacaactgaagctattcagaatatgcatgttgttgaaccggtt
aaaatattgaaacctgatcaggaatggttaaaaccggaattagatgattgtatgcatcaa
atatggtttaatgcagaagttgaacaaattgatagaatgatttattatattatgtccgaa
ggcgtgcctgttgattatcaacattctgatactggtgtaacattgttgatgttagttgca
gtacatggcctgaatgattatgttcttacattattaaatatgggagctaatccagtaatc
acaactagagttttgaataaagatgcagcaacttgggcagctgattttaagcaatatgaa
acgagagatcttattttaaattacaaaggatctactactactaaagaacaaaacgaagaa
tctagagagtttcaagttatggaccgattggagttatataaaaaaagcttatccccaaat
attattatagattcatatttaatatctcatcttataaaatatataattttaaacaagaaa
tcaggttctattttagtatttttaccaggatttgaagatatgtcaatggtcaataaagtt
ataaccgaagaacttattgctaaagatgatttgaaaattaagatttatatgttgcattct
atgatgcagacctcagatcaacaacgagtttttttaccagtacctaaaggatatcaaaaa
gttatacttgcaacaaatattgtagaaactagtgttacaataaatgatatcgtctatgtc
attgattcaggaagagttaaacagaaaggctataatgcattcaatggtataagttgcatg
aatgtaaattggatatctcaaagttgcgcaaaacaaagagctggaagagctggacgttta
tgtgctggagaatgctatcgtctttattctcgagatcactatagttttatgggaacacat
gatatacctgagattctaagaatgcctttacaagaactatgtatgttggccaaagtaata
actaataatatgagagtaatggactttttagcattagctatacaacctccaccaacatta
tctgttattgcagctttggagtatttaaaaactattgaagcaatggatataaatgaagat
ttaacagatcttggatttttcatgctagatttatcaatagagcctcattatgctaaaaca
ctcgtatttgctatatttttaaaatgtcttgatcctgtactcactataataagctgtttg
gctaatagagaaccatttaatttgacccttaatgtaaatatgaaaacctcacttggttct
attcgtaaaaaactagctggtgattcattaagcgatcatatcattcttttacgtttatac
caagcatttaatgaaaaaagtatggtaggtagtgaattgaataatctagtatctcagtct
ataatgggtttaattactcaaacacgaacacaattacttggtcagctaagagctttagaa
ttaatccaaacacgtccaggacctaatgatattagagatgttaattctaattccaataat
tgggctgcagttaaagcttgtttattggctgggctgtacccaaatattgctaaacttgac
aagactagttcaagacctattttaaaaaccaaaactgaaaaaagtgtagtttaccatgga
tcatctgttttacgtgaaaattgtgtaaaagatttaccatcagaatggatagtttttgaa
gaaatgacttcattcaacacaaaaaaatttataaaaaattgcactgtagtatcccccatg
actgttgcattatttgctaatgcaatgagaatacctcatgattcagccgaaaagattgaa
gatgatagtgattgtgacagtgatgaagaatttgtaacaccttcagataaattgggaatt
ttgaatgttgatggctggactaaattattagggagcccagatgacatttcaaaaatacta
aatatgcgtttttgtctcacattagcatatcgtgaatttctcaagaataaaatgataaca
aattacagttcctacaatagtgttgttcaatcagtagttaaagtactggctgctgaagat
ttaatggttggtctcgaagctcctgatgatgttggaaaacgaccaaaggaaaatagcaat
aaaggtcgccatggcaggtatagtaatgaaaatccgtcatttacatcttttcgaaaaata
acccaaggacaacatttattatcaaaaaattatgtggatactggttctttttcaagtgga
cgtaatcattatatagctggtattagaggttcctccagttatagatctcaaaataatcat
tcatcaccaagtacatctcatcatttaaataataattttaagtgtcaacagtaa
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