Daktulosphaira vitifoliae (grape phylloxera): 126895961
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Entry
126895961 CDS
T09738
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03013
Nucleocytoplasmic transport
dvt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126895961
03015 mRNA surveillance pathway
126895961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126895961
Enzymes [BR:
dvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126895961
5.6.2.5 RNA 5'-3' helicase
126895961
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126895961
mRNA cycle factors
Common to processing body (P body) and stress granule
126895961
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
AAA_16
AAA_32
SRP54
Motif
Other DBs
NCBI-GeneID:
126895961
NCBI-ProteinID:
XP_050524278
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MSVDTYGPSSQTLTFLETEEADMIGADTQGTDFDFTDFTLPSQSQAPMSQMDSSSHQMQL
INNKGDKDDTNVITVTKKIGELQFEDEDEDSFFTKELPYYACKYCGIHDPGCVVMCNICK
KWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVKNVFVLGFIPAKA
DSVVILLCRQPCSTQNALKDMNWDQEQWKPLIADRCFLTWLVKVPNETDQLRSRHVSATQ
IAKLEELWKDNNEATINDLDKPGVDEEPQIVLLRYEDGFQYQNVFGPLVKLEADYDKRLK
ESQTQENITVRWDVGLNKKTIAYFHLAKTDGDMRLMHGDELRLRLTGENPWAGIGHVIKI
PDNYGEDVGLELKINNGVPTDITSNYVVDFIWKSTSFDRMQCSLKRFATDESSVSSYIYH
RLLGHEFDDLMFRSHMPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTGKTVTSA
TIVYQLVKINGGPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHN
QVRKMSCNVELQKFQQLKDETGELSMADEKRYRALKKAAERELLKAADVICTTCVGAGDP
RLIRFKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQS
LFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCSDDRKLSKIEFPWPVAD
KPMLFYVTQGQEEIAGSGTSYLNRTEAANVEKIATRFLRCGVKPDQIGIITPYEGQRAYL
VQYMQYQAPLPAKVYQEIEIASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLNVAL
TRAKYGILIVGNPKVLSKQQLWNHLLNYYKANNVLVEGPLNNLKESLIQLSKPKQLVNAA
NPGSHFMNTHVYDAREALVPGSVYDRNNQGNVPNGHTPSQYFPRPSPGAPVGLGLDLYAR
NHDPLTFITPDTRSQPQIGGIPVGMVMNMNSMGPRFFNQQSVQNRQNVRNNRLPMTSGRL
KTKPNQKNQKPNGIGGSPLSQAITQDVSQPYSQNMSQSMSQPGFSLSQPGLSQPELSQDS
YMMGEFHSQMDGLLSQDSTYQGDRTVTSFYNPSNTLYSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacacgtatggtccgagttctcaaactctgacgtttttggaaacggaagaa
gctgacatgatcggtgctgatactcaaggaactgattttgactttactgattttacattg
ccctctcaaagccaagcacccatgtcacaaatggattcgtcatcgcatcaaatgcagtta
ataaacaataaaggtgataaagatgatactaatgttattacagtaacaaagaaaattggt
gagttacaatttgaagatgaagatgaagattcgtttttcactaaggagttgccttactat
gcttgtaaatattgtggtattcatgatcctggatgtgtagtaatgtgtaatatttgtaaa
aaatggttttgtaatggacgtggaaatacgtctggttcacatataataaatcatttggtg
agggccaaacacaaggaagttacattacataaagatggcccacttggcgaaactgtttta
gaatgttattcgtgtggtgttaaaaatgtatttgtacttggttttattcctgctaaagcc
gattctgttgttatacttttgtgtagacaaccatgttctacacaaaacgccttaaaagat
atgaattgggaccaagaacaatggaaaccattaattgctgatcgttgttttttaacttgg
ttagttaaggttccaaatgaaactgatcaattgcgttctagacatgtcagtgctactcaa
atagctaagcttgaagaactttggaaagataacaatgaagctacaattaatgatcttgat
aaacctggagtggacgaagagccacaaattgtactattgagatatgaagacggctttcaa
tatcaaaatgtatttggaccgttagtcaaactagaagctgattatgataaacgtctaaag
gagtcacaaacccaagaaaacattactgtccgttgggatgtcggtttgaacaagaaaaca
atagcttatttccatctagctaaaacagatggtgatatgcgtttaatgcatggtgatgaa
ttacggttacggttaactggtgaaaatccatgggctggtattggtcatgtcattaaaata
ccggataattatggagaagacgtaggattggaattaaaaattaataatggtgtacccact
gatataacatcaaattatgttgttgactttatatggaagtctacatcatttgatagaatg
caatgttcattaaaaagatttgctactgatgaatcatctgtatcatcatatatctatcat
agattgcttggacatgaatttgatgatttgatgtttagatcacatatgcccaaacatttt
tctgctccaaatttacccgatttgaatagatcacaggtatatgcagttaagcatgctgtt
caaaggcctttgtctttaattcaaggaccaccaggaacaggcaaaactgtaacctctgca
actattgtttaccaacttgtgaaaattaatggtgggcctgtattagtgtgtgcaccatca
aacattgctgttgatcaattaactgaaaaaatacaccgaacaggcttgaaagtagtgcgt
gtatgtgctaaatcaagagaagctatagattctcctgtttcattcttagctcttcataat
caagttcgaaaaatgtcttgcaatgttgaacttcaaaaattccagcagcttaaagatgaa
actggtgaattgtcaatggctgatgaaaaaagatatagagctttaaaaaaggcagcagaa
agagaattacttaaagcagctgatgttatatgtactacatgtgttggggctggtgatcca
cgtttaataaggtttaaatttcattctattcttattgatgaaagcatgcaagctacagaa
ccagaatgtatggttccggttgtattaggtgtaaaacagctgatacttgttggagatcat
tgtcaacttggacctgttgttatgtgtaaaaaagcagctagggctggtttaagtcaatca
ttatttgaacgtttggttgtattgggtattaggccattcagactagaagtacaatacaga
atgcatcctgaactttctagattcccctctaactttttttatgaaggttcattgcaaaat
ggagtctgttctgatgatagaaaattaagcaaaattgaattcccttggcctgtagctgat
aaaccgatgttgttctatgtaactcaaggccaagaagaaattgctggatcaggtacatct
tacttgaatcgaactgaagcagctaatgttgaaaaaattgctacaagattcttaagatgt
ggagtaaagcctgatcaaataggtattataacaccctatgaaggacagcgggcatatttg
gtgcaatacatgcaatatcaggcacctctcccagcaaaagtttatcaagaaatagaaatt
gctagtgttgatgcattccaaggtcgtgaaaaagatttaattattatgtcatgtgttcgt
tcaaatgaacatcaaggaattggtttcttaaatgatcctagacgcttaaatgttgccttg
actcgtgcaaaatatggtattctcattgtgggaaacccaaaagtgttatcaaaacaacaa
ctgtggaaccacttgttgaattattataaagcaaataatgtgttggtagaaggaccacta
aataacttaaaagagtctttaattcaattatctaagcctaagcaactagtaaatgctgca
aatcctggttcacattttatgaatactcatgtttatgatgctcgtgaagccttagttcca
ggaagtgtatatgatcgtaataatcaaggaaatgtaccaaatggtcatacaccatcacaa
tatttcccaagaccaagcccaggagctccagttggtttaggtttagatttgtatgctagg
aatcatgatccattgacatttattactccagacacaaggtctcaaccacaaattggcggt
atacctgttggtatggttatgaatatgaactctatgggacctagatttttcaatcaacaa
tctgttcaaaatcgtcaaaatgtacgtaataatcgtttgccaatgaccagcgggcgttta
aagacaaaacctaatcagaaaaatcaaaaacctaatgggattggaggatcacctcttagc
caagctattactcaagatgtttcacaaccctatagtcaaaatatgtcccagagtatgtct
caaccaggttttagtttatcacaaccaggcttatctcaacctgaattatctcaagatagt
tatatgatgggtgaatttcattctcaaatggatgggttactgtcccaggattctacatac
caaggtgatcgtactgtaacttcattctacaacccatcaaatacattgtactcacaacct
tactga
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