Daktulosphaira vitifoliae (grape phylloxera): 126898422
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Entry
126898422 CDS
T09738
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126898422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126898422
03041 Spliceosome [BR:
dvt03041
]
126898422
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126898422
Spliceosome [BR:
dvt03041
]
Complex B
Other components
Prp19-related factors
126898422
Complex C
126898422
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
Mad3_BUB1_I
TPR_2
RPN7
TPR_12
TPR_10
DHR-2_Lobe_A
Mad3_BUB1_I_2
PPR
Motif
Other DBs
NCBI-GeneID:
126898422
NCBI-ProteinID:
XP_050528375
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
MIGNENMAVDSNYKSDALIFQSYKLNKRDVEFEQDILRNPNSVKCWMRYIDNYKFGPYNK
VCVLYERSLKQLPGSYKLWHNYLKIRRKYAKKAENPDYEEINNVYERSLVYMNKMPRIWI
EFCTFMLKQPKLTVARRLFDRALRALPITQHVRIWPLYLNFIKRNHDPEVAVKIYRRYLK
LFPEDAEDYIEYLTTSGRLDEAAVRLSEIVNNDTFISKHGKSKHQLWNELCNLISKNPLE
IKSLNVDAIIRSGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQ
VYDAYAQFEELSLQKRMESVHENSSEKDDSEIDLRMARLENLIERRLLLLNSVLLRQNPH
NVKEWLKRVQLYEGNDVQVINTFTEAVETIDPQKAVGRLHTLWVEFAKFYEKANQLEEAR
LVFKKAVMVHYVKVEHLASVWCEWVEMELRHDNFNEAMKLMRQATAMPSRKVAYHDDTET
VQIRLHKSLKLWSLYLDMEESFGTVKSAMACYDRVIDLRIATPQTIINYGLFLEENNYFE
EMFKAYEKGVALFKWPNVFDIWNTYLTKFLDRYGGNKLERARDLFEECLEGCPPQFAKCI
YLLYAKLEEKHGLGRRAMAVYERATEAVLPEEKFEMFNIYIKKAAEISGIPKTREIYMKA
LEVLNNNNARTMYLRFAELETKLGEIDRARAIYSHCSQICDPRITEEFWQTWTSFEVAHG
NEDTLREMLRIKRSVQAMYNIQVNMMSAQMMSAINVEPEKSGMKLLEEKTMEDKAKTLEP
IKFVLGSEQDRLPKTAVQNPDEIEFSDDDLMTNEDNDEDLPSKKEVPQELFGNLGAFTE
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgattggaaatgaaaacatggcagttgactccaattataaatcggatgctttaatattt
caatcatacaaactaaataaaagagatgtcgaatttgaacaagatatattgagaaatcca
aattctgttaaatgttggatgagatatatagataattacaagtttggaccatataataaa
gtatgtgttctatatgaacgttctcttaaacagcttcctggaagctataaactttggcac
aattatttaaaaatacgtcgtaagtatgcaaaaaaagcagaaaatcctgattatgaagaa
attaacaatgtatatgaacgatcgttagtttacatgaataaaatgccacgcatttggatt
gaattttgcacatttatgctaaaacaacccaaacttacagtagctcggcgattgtttgat
cgagcacttagagctttaccaataactcagcatgttcgcatttggccattatatttaaat
tttattaaaagaaatcatgatcctgaagttgctgttaaaatatatagaagatacttaaag
ctatttccagaagatgcagaagattacattgaatatcttacaacttctggtagattagat
gaagctgctgttcgtttatctgaaatagtaaacaatgatacatttatatcaaaacatggt
aaatcaaaacatcaactttggaatgaattatgtaatcttatatcaaaaaatccattagaa
attaagtctttaaatgttgatgcaattatacgtagtggacttaggcgttatactgatcaa
ttaggtcatttatggaattctttagcagattactacattcgaagtggtttatttgaacgt
gctagagatatatatgaagaagccattcaaaccgtcactactgttcgtgatttcactcaa
gtttatgatgcatatgcacaatttgaagagttaagtttgcaaaaaaggatggaatctgta
catgaaaatagttctgaaaaagatgattctgagattgatttgcgaatggcaagattagaa
aatttaattgaaagaagattattattgttaaattcagttttactgagacaaaacccacac
aatgttaaagagtggcttaaacgtgttcagttatatgaaggtaatgatgtacaagttatt
aacacatttacagaagctgttgaaacaattgatcctcaaaaagctgttggacgtttacat
actctttgggtagagtttgctaaattctatgaaaaagctaatcaattagaagaagcaagg
ttagtctttaaaaaggctgtcatggttcattatgtgaaagttgaacacttagctagtgtt
tggtgtgaatgggttgaaatggaattaagacatgataactttaatgaagctatgaaatta
atgaggcaagcaactgctatgccatcaagaaaagttgcttatcatgatgatactgaaaca
gtacaaatacgactacacaaatctctgaagttatggtcattatatttagatatggaagaa
agttttggaactgtcaaatctgcaatggcttgctatgatcgtgttatagacttacgaatt
gctacacctcagactattattaactatgggttatttttagaagaaaataattattttgaa
gaaatgtttaaagcatatgaaaaaggcgtagctttatttaaatggccaaatgtttttgat
atatggaatacatatttaactaaatttttggatcgttatggtgggaacaaattggaaaga
gcccgtgatttgtttgaagagtgtttagaaggatgtcctccacaattcgctaagtgcatt
tatttattgtatgctaaacttgaagaaaaacatggtttaggtagacgagcaatggctgtt
tatgaaagagcaactgaagctgttttaccagaagagaaatttgaaatgtttaatatatac
attaaaaaagctgcagaaatatctggtattcctaaaactagagagatatatatgaaagct
ttagaagtattgaataataataatgccagaaccatgtatcttagatttgctgagttagaa
acgaaattaggtgaaattgatcgtgctagagctatatattctcattgcagtcaaatttgt
gatcctagaataactgaagagttttggcaaacatggacctcttttgaagtagctcatggt
aatgaagatacacttcgtgagatgcttagaataaagagaagtgttcaagccatgtacaac
attcaagtaaacatgatgtctgctcaaatgatgtcagcaataaatgttgaaccagaaaag
agtggaatgaaattattagaagaaaaaacgatggaagataaagccaagacactggaacct
attaagtttgttcttggtagtgagcaagatcgccttccaaaaacagctgtacaaaatccc
gatgagattgaatttagtgatgacgatttaatgactaatgaagataatgatgaggattta
ccatcaaaaaaagaagtacctcaagaactttttggtaatcttggagcattcactgaataa
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