Daktulosphaira vitifoliae (grape phylloxera): 126899343
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Entry
126899343 CDS
T09738
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03020
RNA polymerase
dvt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126899343
09124 Replication and repair
03420 Nucleotide excision repair
126899343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvt03021
]
126899343
03400 DNA repair and recombination proteins [BR:
dvt03400
]
126899343
Enzymes [BR:
dvt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126899343
Transcription machinery [BR:
dvt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126899343
DNA repair and recombination proteins [BR:
dvt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126899343
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Tom7
Motif
Other DBs
NCBI-GeneID:
126899343
NCBI-ProteinID:
XP_050530091
LinkDB
All DBs
Position
Unknown
AA seq
1845 aa
AA seq
DB search
MASDSKAPLKNVKRVQFGILSPDECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVID
RFSRCQTCAGNMTECCGHFGHIELAKPVFHIGFIPKVIKILRCVCFYCSKLLVSPTHPKV
KEIVMKSKGQPRKRLVFIYDLCKGKNICEGGDELDINKDNVTDPNMPPKKQGHGGCGRYQ
PNIRRAGLDLTAEWKHVNEDSQEKKIPLTAERVHEILKHITDEEVVIMGMDPRFARPDWM
VLTVLPVPPLPVRPAIVMFGSARNQDDLTHKLADIIKCNNELIRNEQSGAATHIISENIK
MLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDQMLELVRRGNSQYPGAKYIIRDNGERID
LRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRKM
TKRDVFLEKEQMMNLLMHLPIWDGKMPTPCILKPKPLWTGKQLFSLIIPGNVNMIRTHST
HPDDEDNGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMDLEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQSIAT
IEPSHKKFEEEFKFDASNERHMRKIFTEDVLKDLMGSNDTVAELEKEWEQLNNDRDTLRE
IFPSGESKVVLPCNLKRMIWNVQKIFHINKRAPTDLNPIKVLHGVKELLDKCIIVAGQDQ
LSRQANQNATLLFQCLVRSTLCTKLVSEKFRLSSEAFEWLVGEIENRFKQAQAAPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADKLILRIRIMNGEDGK
MNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDAKKRIIITDTG
EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA
EVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKAKDGIEIPMDAGYMGMGGGGMFMAAGT
PSMSPAMTPWDHNTATPVYQNSWSSSMTPGGPGFSPAGSSEASGTSPFWMTSGGTPGSPG
SPGMATSPYIPSPSSMSPNYTYPSSPQFGSMSPSMSPSMQNTPKYSSMSPNYHYSPTSPS
YSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQYTASSPSYTPSATSGPS
NYKYSPTSPSLAVSPTYSPTSPTYSPTSPMYSPSSASYSPSSLQHAPSAGNQYNQSYSPS
SPVYSPTNFSVTSPRYSPTYSPTSPTYSPTSPSYSPTSPNYSGPE
NT seq
5538 nt
NT seq
+upstream
nt +downstream
nt
atggctagtgactcgaaagcgcctttaaaaaatgtcaaaagggtacaatttgggatatta
tccccagatgaatgtagacgtatgtcagtcacagaaggtggtatccgttttgcagaaaca
atggaaggaggtagaccaaaacttgggggtctgatggatcctcgacaaggagtaattgat
agattttcaagatgtcaaacatgtgcaggtaacatgactgaatgttgtggccattttggt
catattgaacttgctaaacctgtatttcatattggatttattcctaaagtcataaaaata
ttacgatgtgtatgtttttattgttctaaacttcttgtgagcccaactcatcctaaagta
aaagaaattgttatgaaatctaaaggacaaccaagaaaaagattagttttcatatatgat
ttatgtaaaggaaaaaatatttgtgaaggaggtgatgagttagatataaacaaagataat
gttaccgatcctaatatgccaccaaaaaaacaaggtcatggtggttgtggtcgttaccaa
cctaatattcggcgtgctggtttagatttaacagctgaatggaaacatgtcaatgaagat
tctcaagagaaaaaaatacctcttactgctgaacgtgttcatgaaattttaaagcatata
actgatgaagaagttgttataatgggtatggatccaagatttgcacgtcctgattggatg
gtactaactgttcttccagttccacctttacctgttcgacctgcaatagttatgtttgga
tcagctagaaaccaagatgatttaactcacaaattagctgatataataaagtgtaacaat
gaattaatccgtaatgagcagtcaggtgctgctacccatattatatctgaaaacataaaa
atgttgcaatttcatgtagctacattagtggataatgatatgcctggattacctagagct
atgcaaaaatctggaaagcctctaaaagcaattaaagctcgtttaaaaggtaaagaagga
agaattcgtggtaatttgatggggaaacgagtagatttttctgctcgaactgttattaca
cctgatccaaatttacggattgatgaagttggtgttcctcgtactattgctcaaaacatg
acatttccagaaattgttactccatttaatatagatcagatgcttgaattagtgcgacgt
ggtaattctcaatatcctggtgctaagtatatcattcgggataacggagagagaattgat
ttgcgttttcatcctaaaccttcagatttacatttgcaatgtggttacaaagttgaaaga
catataaaggatggtgatttagtagtttttaaccgtcaacctactttacacaaaatgagt
atgatgggacatcgtgtaagagttcttccttggtctacatttcgtatgaatttgagttgt
acatcaccttacaatgctgattttgacggagatgaaatgaatcttcatgtcccacaatca
atggaaacaagagctgaagtagaaaatattcatattactccaagacaaattattacacct
caagcaaataaacctgttatgggaatcgtacaagataccctaacagctataagaaaaatg
accaaaagagatgtttttctagaaaaagaacaaatgatgaacttattgatgcacttacca
atttgggatgggaaaatgccaactccatgtattttaaaacctaaaccattatggactgga
aaacagttgttttctttaattattccaggtaatgttaatatgatacgtactcattccaca
catcctgatgatgaagacaatggtccatacaaatggatatctcctggagacactaaagtt
atggtagaacatggtgaactagttatgggaatattgtgtaaaaagacacttggtacttca
gccggttcattacttcatatttgtatgttggaattaggacatgaagtgtgtggtcgattt
tatggtaacattcaaactgtagtaaataattggctattatatgaagggcattccattggt
attggtgatacaattgctgatcctcaaacttatttagaaattcaaaaagctattaaaaaa
gctaaagaagatgtcatagaagttattcaaaaagctcacaatatggatcttgagccaaca
cctggtaatactctgagacagacttttgaaaatcaagtaaaccgaattttaaatgatgct
cgtgacaaaactggaggttcagctaaaaaatcattaacagagtataataaccttaaagct
atggtggtatcaggatctaaaggatctaatattaatatttctcaggttattgcttgtgtg
ggtcaacaaaatgtagaaggtaaacgtattccgtttggtttccgaaaacgtactttgccc
catttcattaaagatgattatggaccagagtctagaggttttgttgaaaattcgtacctt
gctggactaacaccttcagaattctttttccatgctatgggaggtcgtgaaggtcttatt
gatactgctgtaaaaactgccgaaactggttatattcaacgacgattgataaaagctatg
gaatctgtaatggtacattatgatggaaccgttcgtaattctgtaggccagctaattcaa
ttgcgttatggtgaagatgggttatgtggtgaagcagtagaatttcaaagtattgctact
atagaaccatctcataagaagtttgaagaagaatttaagtttgatgcttcaaatgaaaga
catatgagaaaaatatttaccgaagatgtactcaaagatttaatggggagtaatgataca
gtagcggaattagaaaaagagtgggaacaattaaataatgacagagatacacttagagag
atatttccatcgggtgaaagtaaagtggtattaccttgcaatcttaaacgtatgatatgg
aatgtacaaaaaatcttccatataaacaagagagctcctacagatttaaatcccatcaaa
gtgttacatggagtgaaagagctattggataaatgtataattgtagctggccaagatcaa
ttaagtagacaggctaatcagaatgctactctgttgtttcaatgtttagtacgctctacc
ttgtgtaccaaattggtttcagaaaaattccgtttatcttctgaagcatttgaatggtta
gttggtgaaattgaaaacagattcaaacaagctcaggctgcacctggagaaatggtgggt
gctttggctgctcaaagtttaggagaacctgccactcaaatgacattgaacactttccat
tttgctggtgtttcttcgaaaaacgtaacccttggagtgcctagattaaaggaaattatt
aacattagtaaaaaaccaaaggctccttctttgactgtgttcttaacgggtgcagcagct
agggatgcagaaaaagcaaaaaatgttttgtgtcgtttggagcatacaactttaagaaaa
gtaacagcaaatactgctatttattatgaccctgatccacaaaatactgtgattagagaa
gaccaagaatttgttaatgtctattatgaaatgcctgattttgaccctactagaatttca
ccttggttattgcgtattgaattagatcgaaaaaggatgacagataaaaaattaactatg
gaagcaatatctgaaaaaataaatgctggctttggagatgatctcaattgtatatttaat
gatgataatgcggacaaattaattttacgtatacgtataatgaatggtgaagatggtaaa
atgaatggaggtgatgatgaagatactgttgacaaaatggaagacgatatgttccttaga
tgtattgaagctaatatgttatctgatatgactctacaaggtatagaagctatagcaaaa
gtttatatgcatctacctcaaactgatgctaaaaaaagaataatcattactgatactgga
gaatttaaagcaattgctgattggttacttgaaactgatggtactagtttaatgaaagta
ttaagtgaacgagatgttgatcctgtcagaacattttctaatgatatttgtgaaatattt
tcggtgttgggtatagaagctgtgagaaaatcagttgaaaaagaaatgaacactgttttg
cagttttacggactgtatgtaaattatcggcatttagctttgttatgtgatgtcatgaca
gctaaaggtcatttgatggccattactcgtcatggaattaacagacaagacactggtgca
ttaatgagatgttcatttgaagaaactgtagatgttttattggacgctgcctcacacgct
gaggtggatccaatgagaggtgtttcagaaaatattataatgggccaacttcctagaatg
ggaacaggttgttttgatttattattggatgctgaaaaagctaaagatggtatagaaata
cctatggatgccggatatatgggtatgggtggtggtggtatgtttatggctgctggtaca
ccttccatgtcaccagcaatgacaccatgggatcacaatacagcaactccagtttaccaa
aatagctggtcatcaagcatgactcctggaggtccaggattctctccagctggatcaagt
gaagctagtggtacttctccattctggatgactagtggtggaacacctggtagtccaggt
tcaccaggcatggctactagcccttacattccaagcccaagttcaatgtcaccaaattat
acatatccttcaagtcctcagtttggttctatgtccccatcaatgtcaccatctatgcaa
aatactccaaaatactcttcaatgtctcctaattatcattattctccaacaagtccttca
tattctcctacaagtccatcttattctcatacatcttattctccgactagcccttcttac
agtccaacatctccttcgtacagccctacatcgccttcttacagcccaacatcgccttca
tatagtcctacatccccatcttatagtcctacatcgccttcttatagcccaacaagccca
tcttatagccctacatcgccttcttacagcccaacaagtccttcatacagtccaacatct
ccatcttacagtccaacttcgccatcatatagccctacatcaccttcatacagtcctagc
tctccgcaatatacagcttcttcaccatcatacacaccaagtgctacatcaggtcctagc
aattataaatattctccaacatctccatctttggctgttagtcctacatattctccgact
agtccaacatattctcctacaagtccaatgtattctccttcaagtgcatcatacagtcca
tcttctctacagcatgcaccttcagcaggaaatcaatacaatcagtcttatagtcctagt
tctcctgtatactctccaacaaatttttcagttacaagtccaaggtactctccaacatac
tcgccgacttcacctacatattcgccaacttcaccaagttattcacctacgtctccaaat
tatagtggccctgaataa
DBGET
integrated database retrieval system
