Daktulosphaira vitifoliae (grape phylloxera): 126904988
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Entry
126904988 CDS
T09738
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03013
Nucleocytoplasmic transport
dvt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126904988
03015 mRNA surveillance pathway
126904988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126904988
Enzymes [BR:
dvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126904988
5.6.2.5 RNA 5'-3' helicase
126904988
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126904988
mRNA cycle factors
Common to processing body (P body) and stress granule
126904988
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
AAA_22
DEAD
NPHP3_N
ATPase
AAA_16
nSTAND3
UvrD-helicase
Helicase_RecD
AAA_7
Ribosomal_S13_N
AAA
P2
SRP54
AAA_6
PhoH
UvrD_C_2
T2SSE
HerA_C
Motif
Other DBs
NCBI-GeneID:
126904988
NCBI-ProteinID:
XP_050540349
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MAMYCAVVITLLKLIDYRTLFEKTETKVIKINELNAEDDKQPPPCSPHSTVPPTNIPCEF
SSSKQYGHFFQPLISAECSYNLKLGEKHSFECKIVSSQNYNKKSKVRFHMNSKNNVFVVD
EELWISSSKMTNAIKGIITSFDQFISVVDVEVNCSMDLPIGTLATLKKSFDKTPYTRMEA
ALATFSYKYECVSPEVRSMLLGRQQQNSLEHNENLTDNLLAPNLPGLNESQLSAVKHALR
SPVSLIQGPPGTGKTVTCANIVYNLSKSGTVLVCAPSNNAVDNLASAVAKTGIDVVRLVK
KTKETVKSDLSSIYLSEQIKKLAGHSEFKTLQGQIDQGVELSPNERRDYNYLRRMAEIDC
LANCRVVCTTCSGAGDNRLEKINFSSVVVDECAQGLEPECIIPITHGAXPECIIPITHGA
KKVVLIGDHCQLGPVVTCPDTRNGGLHRSLLVAAGLQPVRLTVQYRMHPEISEYASQTMY
ESMIRNGVTCNDRTGSIDFTWPNPNVPMVFYSSDANERKSRSGTSFLNYGEAKVVEQLVA
KLLSKGATPNQIGVITPYEGQRSLLKQILNKNKGVEVSSVDAFQGREKEYIVISCVRSNE
RNVIGFLNCVRRLNVALTRAKFGLFLVGNAKVLIKSPTWKNLLRYYDDRNLIVEGSVDDM
RRAHIKFD
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgtattgtgctgttgtcataacactattgaaacttattgattaccgtacactt
tttgagaaaacggaaacaaaagtcataaaaattaatgaactgaacgctgaagatgataaa
caaccaccgccatgttctccgcattcaactgtccctccaacaaatattccctgtgaattt
tcttcgtcaaaacaatacgggcattttttccagccattaataagtgctgaatgctcgtac
aatttaaaactgggcgaaaaacattcgtttgaatgcaaaatcgttagctctcaaaactac
aataaaaaatcaaaagtacgttttcatatgaatagtaaaaataatgtatttgtagttgac
gaagaattatggatttcaagttcaaaaatgaccaacgccataaaaggaattattacaagc
ttcgaccagttcatcagcgttgttgatgttgaagtaaattgttcaatggacctgccaatt
gggacactggcaactttaaaaaagtcatttgataaaaccccttacactcgcatggaagcg
gcacttgctactttttcttacaagtacgaatgtgtttcacctgaagtaagatcaatgttg
cttggacgtcaacagcaaaattcactcgaacataacgagaatctgacagataacctatta
gctcccaatttacctggtttgaatgagtcacagctgtctgctgtgaagcatgccctacgc
tcgccagtttctctaatccaagggcctcccggtactggaaaaacggttacttgtgccaat
attgtatacaatctgtccaagtccggaaccgtattagtttgtgcaccgtcgaacaacgct
gttgataacttggcaagtgccgtggctaaaactggcatcgatgtcgtgagacttgtgaaa
aagacgaaagagacggttaaaagtgatctttcaagtatatatcttagtgaacaaataaaa
aagcttgcgggtcattcagaatttaaaactcttcaaggccagattgatcaaggtgtcgag
ttgagcccaaatgagagaagggactacaattatctgagaagaatggcggaaatcgactgt
ctagcgaattgtcgagtggtgtgcacaacttgctccggcgccggcgacaaccgtttagaa
aaaatcaatttttcttcggtggtcgtggatgaatgcgctcaaggcttagaaccggaatgc
atcattccaatcacccacggagccangccggaatgcattattccaatcacccacggagcc
aaaaaagtggtgttaataggtgaccactgtcagttggggccggttgttacgtgtccggac
actagaaacggaggtctgcatcgttctctattggtagctgctggcctacaaccagttcgt
ttaaccgtacaatacagaatgcaccctgaaatcagcgagtacgcttcacaaactatgtac
gaaagtatgattaggaacggcgtaacttgtaacgaccgaactgggtcgattgatttcacg
tggcctaacccaaatgtgccgatggtattttactcgtccgatgcaaacgaacgaaaatcc
cgatcgggtacgtcttttttgaactatggagaggcgaaagttgttgaacaactagtagca
aaactcctaagcaaaggagctactccaaatcaaattggtgttataactccatatgaagga
cagcgatcacttttgaaacaaattttgaacaagaacaaaggggtggaagtcagtagtgtg
gacgcttttcaaggccgtgaaaaggagtatattgttatatcgtgtgtccgctcgaacgag
agaaacgtcataggtttcctgaactgtgttcgtcggctaaatgtggcacttacgcgtgca
aagtttggtctttttttagttggcaacgctaaagttttgattaaaagccctacgtggaaa
aatttacttcgctactatgacgacagaaatttgattgtcgaagggtcagttgatgatatg
cgtagagcacacataaaatttgattag
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