Daktulosphaira vitifoliae (grape phylloxera): 126907610
Help
Entry
126907610 CDS
T09738
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03008
Ribosome biogenesis in eukaryotes
dvt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126907610
09123 Folding, sorting and degradation
03018 RNA degradation
126907610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvt03021
]
126907610
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126907610
03009 Ribosome biogenesis [BR:
dvt03009
]
126907610
03016 Transfer RNA biogenesis [BR:
dvt03016
]
126907610
Transcription machinery [BR:
dvt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126907610
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
126907610
Ribosome biogenesis [BR:
dvt03009
]
Eukaryotic type
Pre-60S particles
RNases
126907610
Transfer RNA biogenesis [BR:
dvt03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
126907610
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
126907610
NCBI-ProteinID:
XP_050544963
LinkDB
All DBs
Position
Unknown
AA seq
952 aa
AA seq
DB search
MGVPAFFRWLTRKYPSVIVNCIEQQSTDVNGEKIPIDASESNPNGVEFDNLYLDMNGIIH
PCSHPENKPAPKNEDEMMIAIFECIDRLFRIVRPRKILYMAIDGVAPRAKMNQQRSRRFR
ATKETIEKAEELARVRENLIKAGAILPPEKPKGEHFDSNCITPGTPFMDNLSKCLHYYIH
ERLNNDPGWKGIKVILSDANVPGEGEHKIMDFIRKQRAQPNHDPNTQHVLCGSDADLIML
GLATHEPNFTIIREEFKPNQPRPCDMCGQMGHEMKDCQGLEKDVFNDGSSMICPSNDQFI
FVRLNVLREYLERELEMPNLPFKYEFERALDDWVFMCFFVGNDFLPHLPSLEIRENAIDR
LIALYKKTVYKTGGFLTLNGDVNLDRVQLIMSDLGLAEDEIFKKRQQTEKMFADRNRLKK
RREKLMRSNSAPNFILGGQYKPMAPNTTFSVSNPKQTIDDIRRQSMGNESNQGQKRKRED
DDDDEEEETPDEVRLWEDGFKERYYESKFDVERTNSDFRHRVALEYVRGLCWVLQYYYQG
CPSWKWYFPYHYAPFASDFVNISALSTNFEKGTQPFNPLEQLMSVFPAASNKLVPKPWAT
LMSEPDSPIIDFYPIDFKIDLNGKKFAWQGVALLPFVDETRLHKALESVYDLLTPEEKRR
NTKGYDRLYIQQDNSKYELLKDLHLNKENFNNFTSVVIDGMEGKVMLTVESVNIGGSLPS
PIMGLDVIRCNQVLCVKFEYPSYGKDYVYEAIRLKGVVEPPRVLKPKHLSDEQSRSWRPI
TGMNYTSQRGRFSASGQRMLSHHVPRHTGQYSSVPPPQGLRNNPRQTDFNNFRRPNHNYN
SQQTKQNQYSRNNRNSNYGNNSDIQNNQYRTNNNHYSNYGSQYSSGQQSFVSNNRTGYFT
PGYQTNNQTSHQPYNGNTDLSSDRQNNRYQPYNPQTQRGGPRPHGYNQHHNY
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcatttttcagatggcttactagaaaatatccatcagttattgttaat
tgtattgaacaacaatcgactgatgtaaatggcgagaagattcctattgatgcatctgaa
tcaaatccaaatggagttgaatttgataatttatatttagatatgaatggaataattcat
ccatgttctcacccagaaaataagccagcacctaaaaatgaagatgaaatgatgattgct
atttttgaatgtattgatcgcttattcagaattgtcagacctagaaaaatattatacatg
gctattgatggtgtggcaccaagggcaaaaatgaatcaacaaagatctagacgttttaga
gctactaaagaaactattgaaaaagctgaagaattagccagagtgagggaaaatttaata
aaagctggtgctatactaccaccagagaaaccaaaaggagaacattttgatagcaattgt
attactcctggtacaccatttatggataatttatctaaatgcttacattattatattcat
gaacgattgaacaatgatcctggatggaaaggcattaaggtaatattgtctgatgcaaat
gttcctggtgaaggagaacataaaataatggatttcataagaaaacagcgagcacaaccc
aatcatgatcctaatactcagcatgtactctgtgggtccgatgctgatcttataatgttg
ggattggcaacacatgagccaaattttacaattatccgtgaagaatttaagccaaatcag
ccaagaccttgtgacatgtgtggacaaatgggtcatgagatgaaagattgtcaaggttta
gaaaaagatgtttttaatgatggttctagtatgatttgtcctagtaatgatcaattcatt
tttgtccgtttaaatgtcttacgagaatatttagaaagagagttagaaatgcctaattta
ccatttaaatatgaatttgaaagagctttagatgattgggtttttatgtgtttttttgtg
ggtaatgactttttaccacatctaccatccttagaaatacgagaaaacgcaattgataga
ctaattgctctttataaaaagacagtttataaaactgggggatttttaaccttaaatgga
gatgtgaacttggacagagttcaattgatcatgtcagatttaggcttagcagaagatgaa
atttttaaaaaaaggcaacaaacagaaaaaatgtttgctgatagaaatagattaaaaaaa
agacgagagaagttgatgcgctctaatagtgctcctaattttattttaggtggtcaatat
aaacctatggcacctaacacaacattttctgtgtctaatccaaaacaaacaattgatgat
attagaaggcaaagtatgggaaatgaaagcaatcaaggtcagaaacgcaaaagagaagat
gatgatgatgatgaagaagaggaaacacctgatgaagtgcgtctatgggaagatggtttc
aaagaacgttattatgaatcaaaatttgatgttgaaagaacaaatagtgatttcagacat
agagttgcattagagtatgtacgtggattatgttgggttcttcaatattactatcaaggg
tgtccatcatggaaatggtattttccatatcactatgctccttttgcatctgattttgtt
aatatatcagcattatcaactaattttgaaaaaggaacccaaccgttcaatccattagaa
caacttatgagtgtatttccagctgctagtaacaaacttgtacctaagccatgggctact
ttaatgtctgagcctgactcgcccattatagatttttacccgattgactttaaaatagac
ttaaatggcaagaagtttgcttggcaaggtgttgcattattaccatttgttgatgaaaca
agactacataaagcacttgaatctgtttatgatctgttgacacctgaagagaaacgccgt
aatacaaaaggatatgatcgcttatacatccagcaagataattcaaaatatgaattactt
aaagatttacatttaaataaagaaaactttaataattttacatcagtagttattgatgga
atggaaggtaaagtgatgttaactgtagagagtgttaacattggaggatcactaccatca
ccaattatgggcttggacgttataagatgcaatcaagttttatgtgtaaaatttgaatat
ccctcatatggaaaagattatgtatatgaagcaatcagacttaaaggagttgtggaacct
ccaagagttttgaaaccaaaacatttgtcagatgagcaatcaagatcctggagacctata
actggaatgaattacacaagtcagcgtggtagatttagtgcttctggacagagaatgtta
tcgcatcatgtacctagacatactggacaatatagttctgttcctccaccacaaggactt
agaaacaatcctcggcagacagattttaacaattttagacgtcctaaccataattataat
tctcaacagaccaaacaaaatcagtattcaagaaataatcgaaattctaactatggtaat
aactcagatattcaaaataatcagtacagaaccaataataatcattactcgaattatggt
tctcaatattcctctggacaacaatcttttgtttcaaataatagaactggatattttaca
cctggttatcaaacaaataatcaaacgtctcatcaaccttacaatggaaatacagattta
tcaagtgatagacaaaataaccgatatcagccatacaacccccaaacccaaagaggtgga
ccacggcctcatggttacaatcaacatcataactattaa
DBGET
integrated database retrieval system
