Daktulosphaira vitifoliae (grape phylloxera): 126908079
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Entry
126908079 CDS
T09738
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126908079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dvt03041
]
126908079
Enzymes [BR:
dvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126908079
Spliceosome [BR:
dvt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126908079
Complex C
U5 SnRNP specific factors
126908079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
HTH_61
AAA_30
AAA_19
AAA_16
nSTAND3
Albumin_I_a
Motif
Other DBs
NCBI-GeneID:
126908079
NCBI-ProteinID:
XP_050545887
LinkDB
All DBs
Position
Unknown
AA seq
2148 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIDRRNRDEATGEVCSLVGKLDGTKMGDRFQRTK
PVKAEERKAKRQKRDEAQYDFARMKGTTLLSDGVDDMVGIMYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDRLKDKEKKLDTEGLLGSLADERFALLVNLGKKIT
DFGTDEKGGVNTEDNIDETYGINVQFEESEEEDDEDVYGEIREGDDHEDEGEESKLDATI
HAENLDKRTVKKPVEQIKKEKSLHALDIDAYWLQRSLSKYYSDAMASQAKAAEVLAVLKN
AGDDRDCENQLVLLLGYECFDFIKILKKNRLMILFCTLLASSQSESERQSLRKKMESDPF
LSRILRQMDTKEVDDVKDSNVGIDNKKRKIVNEEDDNVNISDCRKQVAGNRKVLDLDDLV
FSQGSHFMSNKRCQLPDGSFRKQRKGYEEVHVPALKPKPFNDNEILVAIEKLPKYVQPAF
EDFKTLNRIQSRLYNSTLDSDENLLICAPTGAGKTNVALLCMLREIGKHINSDGTINADE
FKIIYIAPMRSLVQEMVGSFGKRLSSYNLTVSELTGDHQLTREQIQATQIIVCTPEKWDI
ITRKGGEKTFVSLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETIQEDVRLVGLSATL
PNYQDVATLLRVKSDTGLFYFDNSFRPVPLEQQYIGITEKKAVKRFQVMNEIVYEKIMEH
AGRNQILVFVHSRKETGKTARAIRDMCLEKDTLGNFLREGSASMEVLRTEAEQVKNSELR
DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLISTATLAWGVNLPAHTVIIKGTQVYS
PEKGRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLVS
KLPDMLNAEIVLGTIQSVKEAVTWLGYTYLYIRMLRAPSLYAITQEKLEIDPLLEGYRAD
IIHTAAIHLERSNLIKYDRKTGYFQVTELGRIASHYYCTHDTMATYNQLLKPTLSEIELF
RVFSLSGEFRHIGVRDEEKLELQKLMERVPIPIKEGIEEPSAKINILLQAYISQLKLEGF
ALMSDMVFVTQSAARLMRAIFEIVLHRGWAQLADKALSLCKMIDRRMWQSMSPLRQFRKM
PEEIVRKIEKKNFPWERLYDLGPSEIGELIRVPKLGKTIHRYVHQFPKLELATHIQPVTR
STLRVELTITPDFQWDEKLHGNSEAFWVLVEDVDSEVILHHEFFLLKSKYATDEHLLKFF
VPVFEPLPPQYFLRIVSDRWIGSETQLPVSFRHLLLPEKNVPPTELLDLQPLPVSALRNK
VFEELYAERFHQFNPIQTQVFNAVYNSDENVFIGAPTGSGKTAIAEFALYRLLSQNPESR
CVYLVAKESQAELIYSSWHVIFGIGLARKVVLLTGEIGTDLKLLAKGQIIVTTAEKWDVL
SRRWKQRKNVQNISLFIVDELQLIGGEDGPVLEVVCSRMRYIASQTEKQMRVVALSAPLT
DARDVALWLGAPATTTFNFHPSVRPVPLELHVQGYNITHNATRLVAMGKPTYNAILKYSI
EKPVIIFVPSRKQARLTAIELLTYTAADNQPNRFIHAEEDDIKPFVEKITDKTLKETLLQ
GVAYLHEGVSVQDQRWVQQLFFTGAIQVVVVTRSLCWALSITSHLVIIMDTQFYDGKTHT
YEDYPITDAIQMVGRANRPLDDDDSKCVLMCQSSKKDFFKKFLNEPLPVESHLDHRLHDH
FNAEIVTKTIENKQDAVDYMTWTFLYRRLTQNPNYYNLQGVSHRHLSDYLSELVETTLND
LYQSKCISVEDEIDCIPLNLGMIAAYYYINYTTIELFSLSLNNKTKIRGLLEIISSAAEY
EKIPVRHREDTLLKSLAQRLPNKLQPSSGQTSVRYNDPHVKVNLLLQAHLSRLQLGAELQ
GDTEVILAKAIRLIQACVDVLSSNGWLSPAVAAMELAQMITQAMWAKDSYLKQLPHFTSD
IIKRCTEKGIETVFDIMELEDEDRSKLLQLNDNEMAEVAKFCNRYPNIELSYEVSNKNRV
TAGSSVNITVNLEREDEVVGPVIAPFFPQKREEGWWLVIGDPKTNSLLSIKRLTLQQKAK
VKLDFVAPNPGNYSYTLYFMSDAYMGCDQEYKMNIEVGDYESAGSESE
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcagcggctcgtcagcttcagtacgaatataaagcgaattctaatttagtt
ttacaagctgatgtacgccttattgatagacgtaatagagatgaagctaccggagaggta
tgttcacttgttggaaaattggatggtaccaagatgggcgatagatttcaaagaactaaa
ccagttaaagctgaagaaagaaaggccaagagacaaaaacgtgatgaagcacaatatgac
tttgctcggatgaaaggtactactcttttatcagatggagttgatgatatggttggaata
atgtatagacctaagactcaggaaacaagacaaacttatgaagttcttctaagttttatt
caagaagctcttggagatcagcctcgagacatactttgtggagcggctgatgaagtttta
gcagtactaaaaaatgaccgtttaaaagacaaagaaaaaaaattagatactgaaggttta
ctcggatcattggccgatgaaagatttgctcttttagtaaatcttgggaaaaaaattact
gattttggaactgatgaaaaaggaggtgttaatactgaagacaatattgatgaaacatat
ggaataaatgttcaatttgaagaaagtgaagaagaggacgatgaagatgtgtatggagaa
ataagagaaggggatgatcatgaagatgaaggcgaagagtcaaaattggatgctacaatt
catgcagaaaatttggataaacgtacagttaagaaacctgttgaacaaattaaaaaagag
aaaagtttacatgctttggatatagatgcttactggctgcaaagaagtttgtctaaatac
tacagtgatgctatggcctctcaagctaaagcagctgaagttttagctgttcttaagaat
gctggtgatgaccgtgattgtgaaaatcaattagttcttttactaggttatgaatgtttt
gattttatcaaaatattgaaaaaaaatcggttaatgattttattttgtactcttttggcg
tcctctcaaagtgaatctgaaagacaatcattacgtaaaaaaatggaatctgatccattc
ctttcacgtatattacgtcaaatggatactaaagaggtcgatgatgttaaggatagtaat
gttggcatagacaataaaaaaagaaagattgttaatgaggaagatgataatgtaaatatt
agtgattgcagaaaacaagtagcaggaaatagaaaagttctagatttagatgatttagta
ttttcacaaggatctcattttatgtctaataaaagatgtcaacttccagatggatcattt
agaaaacagcgtaaaggatatgaagaagtacatgttccagcattgaagccaaaacccttt
aatgataatgaaattttagtagcaatagaaaagctacctaaatatgttcaacctgctttt
gaagattttaaaaccctcaatagaattcaatcgaggttgtataatagtacactagattct
gatgaaaatttattgatttgtgctcctacaggtgctggaaaaacaaatgttgcattattg
tgtatgcttagagaaattggaaaacatataaatagtgatgggactataaatgcagacgag
tttaaaataatttatattgctccaatgagatctcttgtacaagaaatggttggaagtttt
ggaaagagactgagtagctacaacttaactgtttctgaattgactggagatcatcaatta
actcgtgagcaaatacaggcaacacaaattattgtatgtactccagaaaaatgggatatt
ataacaagaaaaggaggagaaaaaacatttgtatcactagttagacttattattattgat
gaaattcatttgttacatgatgaacgtggacctgtacttgaagctttagttgctagaaca
attagaaatattgaaacgattcaagaagatgtaaggttggttggtttaagtgcaacatta
cctaattatcaggatgtagctactcttcttagagttaagtctgatactggtcttttttac
tttgacaactcttttagaccagttccattggaacaacaatatattggtataactgagaaa
aaagctgtcaaacgatttcaagtaatgaatgaaattgtttatgaaaaaataatggaacat
gcagggcgcaatcaaattttagtttttgtgcactcaagaaaggaaacaggcaagactgct
agagctataagagatatgtgtttagaaaaagatacacttggcaattttctacgcgaaggt
tctgcttcaatggaagtattacgtacagaagctgaacaagttaaaaatagtgaattgagg
gacttattgccttatggatttgccattcatcatgcaggaatgactcgagttgacagaaca
ctagttgaagacctttttgctgatcgtcacattcaagttcttatttctactgcaacatta
gcttggggtgtaaatttaccagcacacactgtcattataaaaggaactcaagtttatagt
cctgaaaaaggacgttgggttgaacttggtgcattagatgttctacaaatgttaggtcgt
gcaggacgtccacaatatgatactaaaggagaaggtatactaattactaatcatagtgaa
ttgcaatactatttgtcacttttaaatcaacaattacctatagaatcacaactagtttct
aaattgccagatatgttaaatgctgaaattgtacttggcacaatacaaagcgtaaaagaa
gctgttacttggttagggtatacatatttgtatatacgaatgttacgtgctccatctttg
tatgcaataactcaagaaaaattagaaattgatccattattagaaggatatagggcagat
attattcatactgctgcaatacatttagaaagaagcaatttaataaaatatgataggaag
acaggatattttcaggttactgaacttgggcgaattgctagtcattattactgtactcat
gacacgatggctacatataatcaactattaaaaccaacattaagtgaaattgaattgttt
agagtattttctttatcaggtgaatttcgccacattggagttagagatgaagaaaaactt
gaattacaaaaattaatggaacgtgttcctattccgattaaagaaggcattgaagaacct
agtgctaaaataaatattttacttcaagcatatatatctcaattaaaacttgaaggtttt
gcattgatgtctgacatggtgtttgttactcaatcagctgcacgattaatgcgtgctatt
tttgaaattgttttgcatcgtggatgggctcaactagcagataaagctctgagtctttgt
aaaatgattgatagaagaatgtggcaaagtatgtcacctttgagacagtttagaaaaatg
cctgaagaaattgttagaaaaattgaaaagaaaaattttccttgggaacgtttgtatgat
cttgggccaagtgaaataggtgaattgattcgtgttcctaaacttggaaaaactattcat
agatatgttcatcaatttccaaaacttgaattagcaacacatatacaaccagttactcgg
tctacattgagagttgaattaaccataactcctgattttcaatgggatgaaaaattgcat
ggtaattctgaagctttttgggtgttagttgaagatgttgattcagaagttattttacac
catgagtttttcttgctgaaatcaaaatatgctactgatgaacatttacttaaatttttt
gtccctgtttttgaacctttacctccacaatactttttgaggattgtttccgatcgttgg
attggttcagaaactcaattaccagtatcttttagacatttgttattgccagaaaaaaat
gtccctcctactgagcttttagatttgcaaccacttccagtgtccgcattgcgcaataaa
gtatttgaagaactttacgctgagagatttcatcaatttaatccaattcaaactcaagta
tttaatgctgtatataacagtgatgaaaatgtgttcattggtgcaccaactggatcagga
aaaactgcgattgcagaatttgcactttatcgtcttttaagccagaatcctgaaagtaga
tgtgtatacttagttgccaaagagtctcaggctgaactgatttattctagctggcatgtt
atatttggtattggccttgcaaggaaagttgtattactgacaggagaaattggtacagac
ttaaagctgctagctaaaggtcaaattattgtgacaacagcagaaaagtgggatgtacta
tctcgaagatggaaacaaagaaaaaacgttcagaatataagtctttttattgtggacgaa
cttcaattaattggtggtgaagatggtccagttttagaagttgtgtgttctagaatgcgg
tacattgcctcacaaacagaaaagcaaatgagggtagttgctctttcagcaccacttact
gatgccagggatgtggctttatggttaggtgctccagccacaactacattcaacttccac
cctagtgttagacctgttcctttagaacttcatgtgcaaggatataacattacacataat
gctactaggttagtagctatgggtaaaccaacttacaatgctattttgaagtatagcata
gagaaaccggttattattttcgttccatcaagaaaacaagctcgacttaccgctatagaa
ttattaacctatactgcagctgataatcaacctaatcgttttatacatgctgaagaagat
gatataaaaccatttgttgaaaaaattacagataaaactttaaaagaaacattattgcaa
ggtgttgcatatttacatgaaggagttagtgttcaagatcaacgttgggttcaacaactt
ttcttcactggagcgattcaagttgtagttgttacaagaagtttatgctgggctttaagc
attacttctcatttagttataatcatggatactcaattctatgatggaaaaacccataca
tatgaagattatcctataactgatgccattcaaatggtaggtagagctaatagaccactg
gatgatgatgattcaaaatgtgttttaatgtgtcaatcatcaaaaaaagatttttttaaa
aaatttttgaatgagccattacctgttgaaagtcatctagatcatagacttcatgatcat
ttcaatgcagaaattgttactaaaactattgaaaataaacaggatgctgtagattatatg
acctggacatttctatacagaagacttacccagaatccaaattattataatttacaaggt
gtatctcatagacatttgtcagactatttgtcagagctagttgaaacaacacttaatgat
ttatatcagtcgaagtgcattagtgttgaagatgaaatagattgtataccattgaatttg
ggtatgattgcagcttattattatataaactacacaactattgaattgttttcattgtcc
ttaaataataaaactaaaattcgcggcttattagaaattattagttctgctgctgaatat
gaaaaaattcctgttaggcaccgtgaagataccctattaaaaagtcttgcacaacgtttg
cctaataaactgcaaccctcatctggacaaacttcggttcgctataatgatcctcatgta
aaagtcaatttacttcttcaagctcatttatcacggttacaacttggtgctgaacttcaa
ggagatactgaagtcattttagcaaaagccatacgtttaattcaagcttgtgttgatgtg
ttaagttctaatggttggttatcacctgctgtcgcagctatggagttggcacaaatgatt
actcaagcaatgtgggcaaaagattcatatcttaaacaattacctcattttacttcagat
ataattaagagatgtaccgaaaaaggtattgaaactgtatttgacataatggaattagaa
gatgaagatcgctctaaattattgcaactaaatgataatgaaatggctgaggtcgccaag
ttttgtaatcgttatcctaatattgaattaagttatgaagtttctaacaaaaaccgtgta
actgctggatccagtgtaaatattacagttaatttagaaagagaggacgaagttgttgga
cctgttattgccccatttttccctcaaaaacgtgaagaaggttggtggttagttattggt
gacccaaaaacaaattctttgttatctattaaaagattaacattacaacaaaaagcaaaa
gtgaaattagattttgttgcaccaaatcctggtaactattcatatacattatattttatg
agtgatgcatacatgggttgtgatcaagaatacaaaatgaacattgaagttggtgattat
gaatctgctggaagtgaatccgaataa
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