Daktulosphaira vitifoliae (grape phylloxera): 126908294
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Entry
126908294 CDS
T09738
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03013
Nucleocytoplasmic transport
dvt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126908294
03015 mRNA surveillance pathway
126908294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126908294
Enzymes [BR:
dvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126908294
5.6.2.5 RNA 5'-3' helicase
126908294
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126908294
mRNA cycle factors
Common to processing body (P body) and stress granule
126908294
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
ResIII
AAA_22
SLFN-g3_helicase
DEAD
NPHP3_N
ATPase
AAA_16
nSTAND3
Helicase_RecD
UvrD-helicase
P2
Ribosomal_S13_N
AAA_7
AAA
SRP54
UvrD_C_2
PhoH
AAA_6
HisKA
T2SSE
NTPase_1
Motif
Other DBs
NCBI-GeneID:
126908294
NCBI-ProteinID:
XP_050546166
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MAMYCAVVITLLKLIDHRTLFEKTETKVIKINELNAEDDKLPLPCSPHSTVPPTNIPCVF
SSSKQYGHFFQPLISAECSYNLKLGEKHSFECKIVSSQNYNKKSKVRFHMNSKNNVFVVD
EELWISSPKMTNAIKGIVTNFDQFMSVVDVEVNFSIDLPIGTPATLKKSFDKTPYTRMEA
ALATFSYKYESVSPEVRSMLLGRQQQHSPERDENLTDNSLLAPNLPGLNESQLSAVSHAL
RTPVSLIQGPPGTGKTVTCANIVYNLSKSGTVLVCAPSNNAVDNLANAVAKTGIDVVRLV
KKTKETVKSDLSNIYLSEQIKKLAGHSEFKTLQGQIDQGVELSPKERRDYNYLRRKAEID
CLANCRVVCTTCSGAGDNRLEKINFSSVVVDECAQGLEPECIIPITHGAKKVVLIGDHCQ
LGPVVTCPDTRNGGLHRSLFERLVAAGLQPFRLTVQYRMHPEISEYASQTMYESTIRNGV
TCSDRTGSIDFTWPNPNVPMVFYSSDANERKSRSGTSFLNYGEAKVVEQLVAKLLSKGAT
PNQIGVITPYEGQRSLLKQILNKNKGVEVSSVDAFQGREKEYIIISCVRSNERNVVGFLN
CVRRLNVALTRAKFGLFLVGNANFLVKNPTWKSLLRYYDDRNLIVEGTVDDMRTAHIKFD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgtattgtgctgttgtcataacactgttgaaacttattgatcaccgtacactt
tttgagaaaacggaaacaaaagtcataaaaattaatgaactaaacgctgaagatgataaa
ctaccactgccatgttctccgcattcaactgtccctccaacaaatattccctgtgtattt
tcttcgtcaaaacaatatgggcatttttttcagccattaataagtgctgaatgctcgtac
aatttaaaactgggcgaaaaacattcgtttgaatgcaaaatcgttagctctcaaaactac
aataaaaaatcaaaagtacgttttcatatgaatagtaaaaataatgtatttgtagttgac
gaagaattatggatttcaagtccaaaaatgaccaacgccataaaaggaattgttacgaac
ttcgaccagttcatgagcgttgttgatgtagaagtaaatttttcaatcgacttgccaatt
gggacaccggcaactttaaaaaagtcatttgataaaaccccttacactcggatggaagcg
gcacttgctactttttcttacaagtacgaatctgtttcacctgaagtaagatcaatgttg
ctcggacgtcaacaacaacattcacccgaacgtgatgaaaatctgacagataacagccta
ttagctcccaatttacctggtttgaatgagtcacagctgtctgctgtgagccatgcccta
cgcacgccagtttctctaatccaagggcctcccggtactggaaaaacggttacttgtgcc
aatattgtatacaatctgtccaagtccggaaccgtattagtttgtgcaccgtcgaacaac
gctgttgataacttggcaaatgccgtggctaaaacaggcatcgatgtcgtgagacttgtg
aaaaaaacgaaagagacggttaaaagtgatctttcaaatatatatcttagtgaacaaatt
aaaaagcttgctggtcattcggaatttaaaactcttcaagggcagattgatcaaggtgtc
gagttgagcccaaaagagagaagggactacaattatctgagaagaaaggcggaaatcgac
tgtctagcgaattgtcgagtggtgtgcacgacttgctccggcgccggcgacaaccgttta
gaaaaaatcaatttttcttcggtggtcgtggatgaatgcgctcaaggcttagaaccggaa
tgcatcattccaatcacccacggagccaaaaaagtggtgttaataggtgaccactgtcag
ttggggccggttgttacgtgtccggacactagaaacggaggtctgcatcgttctctgttc
gagagattggtagctgctggcctacaaccatttcgtttaactgtacagtacagaatgcac
cccgagatcagcgagtacgcttcacaaactatgtacgagagtacgattaggaacggcgta
acttgtagcgaccgaactgggtcgattgatttcacgtggcctaacccaaatgtgccgatg
gtattttactcttccgatgccaacgaacgaaaatcgcgatcgggcacgtctttcttgaac
tatggagaggcgaaagttgttgaacaactagtagccaaactccttagcaaaggagctact
ccaaatcaaattggtgttataactccatatgaaggacagcgatcacttttgaaacaaatt
ctaaacaagaacaaaggggtggaagtcagtagtgtggacgcttttcaaggccgtgaaaag
gagtacattattatatcgtgtgtccgctcgaacgagagaaacgtcgtaggtttcctgaac
tgtgtccgtcggctaaatgtggcacttacgcgtgcaaagtttggtctttttttagttggt
aacgctaactttttggttaaaaaccctacgtggaaaagtttactacggtattatgacgac
agaaatttgattgtggaagggacagttgatgatatgcgtacagcacatattaagtttgat
taa
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