Daktulosphaira vitifoliae (grape phylloxera): 126908450
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Entry
126908450 CDS
T09738
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvt03016
]
126908450
Enzymes [BR:
dvt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
126908450
Transfer RNA biogenesis [BR:
dvt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
126908450
Prokaryotic type
tRNA splicing ligases
126908450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
126908450
NCBI-ProteinID:
XP_050546471
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRPYNEELGYLEKKTPYMWEIKKGFQPNMKVEGVFYVNKMLEKLMLEELQNACRPGMI
GGFLPGVKQIANVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDIDDPTSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMNANDLEEALEMGMDWS
LREGYVWAEDKEHCEENGRMLNADSSKVSTRARKRGLPQLGTLGAGNHYAEIQVVDEVYD
KWAAKKMGIENKGQVCIMIHSGSRGFGHQVATDALLEMEKAMKRDNIETNDRQLACARIN
STEGQNYLKAMSAAANFAWVNRSSMTFLARQAFAKQFNLTPDDLDMHVIYDVSHNIAKME
QHFVGGKPKHLLVHRKGSTRAFPPYHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
NETFGSTCHGAGRALSRAKSRRNLDYTQVLEKLEQQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHEAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttagaccatacaatgaagaattgggttatttggaaaagaagactccttacatg
tgggaaattaaaaaaggatttcaacctaacatgaaggttgaaggtgtgttttatgttaac
aaaatgttggaaaaacttatgcttgaagaacttcaaaatgcttgtcggccaggaatgata
ggtggatttttacctggtgtaaaacaaattgctaatgtagctgctctacctggaatagtt
cataaatctattggtttacctgatgttcattctggttatgggtttgctattggtaatatg
gctgcatttgatatagatgatcccacatcaatagtatctcctgggggtgttggttttgat
ataaactgtggtgttagattgctccgtacaaatttatttgaaaaagatgtacaaccaata
aaagaacaactagctcaaagtatgtttgatcacattcctgtaggtgttggctctaaagga
attattccaatgaatgcaaatgatcttgaagaagccttagaaatgggaatggactggtca
ttaagagaaggttatgtctgggctgaagacaaggaacattgtgaagaaaatggtaggatg
ttaaatgctgattcttcaaaagttagcacaagggcaagaaaacgaggtttgcctcaatta
ggaacactgggtgctggaaatcattatgcagaaattcaagtcgttgatgaagtttatgac
aaatgggcagcaaagaaaatgggaattgaaaataaaggtcaagtttgtattatgatacat
tctggaagtcgaggatttggacatcaagtagctactgatgctttactagaaatggaaaaa
gcaatgaaacgagataatattgagacaaatgatcggcagttagcttgtgctcgtattaat
tctacagaaggtcaaaactatttaaaagccatgtcagctgcggcaaattttgcttgggtt
aatcgaagttctatgacatttttagcacgtcaggcgtttgccaaacagttcaatttaaca
ccagatgatttagatatgcatgtaatttatgatgtgtctcacaatattgcgaaaatggaa
caacattttgttggtggaaaacctaaacatttattggtgcacagaaaagggtcaactaga
gcttttccaccatatcatcctcttattccagtagattatcaattgactgggcaacctgtt
ttaattggaggtactatgggtacatgttcatatgttctaactggaacagaacagggtatg
aatgaaacatttggatctacctgccatggagcgggacgagctttatctagagcaaaatct
cgtagaaatctggattacactcaagttttagaaaagctagaacaacaaggtatctctata
agagttgcttcgccaaaattagtcatggaagaagctccagaatcttataaaaatgttaca
gatgtagttgatacttgccatgaagcagggatcagtaaaaagactgttaaattaagacct
atagctgtaataaaaggataa
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